Locus 6876

Sequence ID 3L_DroMel_CAF1
Location 18,516,646 – 18,516,739
Length 93
Max. P 0.901248
window11151

overview

Window 1

Location 18,516,646 – 18,516,739
Length 93
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 81.70
Mean single sequence MFE -38.12
Consensus MFE -24.81
Energy contribution -24.87
Covariance contribution 0.06
Combinations/Pair 1.15
Mean z-score -2.87
Structure conservation index 0.65
SVM decision value 1.02
SVM RNA-class probability 0.901248
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18516646 93 + 23771897
-----------AGUCCUUGCAUUUGUCAGUCUAGGCAGGCAAUAUGGCU----GCUCAUUUCCUGUGCGCACAGCGGAAGUGAUUUGAGC-UGCCUGCGGGAUAUGGAG
-----------.(((((.(((.(((((.((....)).)))))...(((.----(((((..((((.(((.....)))..)).))..)))))-.)))))))))))...... ( -33.20)
>DroPse_CAF1 145763 102 + 1
GAGGUGAGAGAAAUGCCUGCAUUUGUCAGUCUAGGCAGCCAAUAUGGCUGCCUGCUCAUUUCCUGUGCGCACAGCGGAAGUGAUUUGAGCCAGCUUGCAGGC-------
..............(((((((.(((.......((((((((.....))))))))(((((..((((.(((.....)))..)).))..))))))))..)))))))------- ( -42.20)
>DroEre_CAF1 138062 93 + 1
-----------AGUCCAUGCAUUUGUCAGUCUAGGCAGGCAAUAUGGCU----GCUCAUUUCCUGCGCGCACGGCGGAAGUGAUUUGAGC-UGCCUGCAGGACAUGGAG
-----------.((((.((((.(((((.((....)).)))))...(((.----(((((..((((.(((.....)))..)).))..)))))-.)))))))))))...... ( -37.20)
>DroYak_CAF1 142349 93 + 1
-----------AGUCCAUGCAUUUGUCAGUCUAGGCAGGCAAUAUGGCU----GCUCAUUUCCUGUGCGCACGGCGGAAGUGAUUUGAGC-UGCCUGCAGGACAUGGAG
-----------.((((.((((.(((((.((....)).)))))...(((.----(((((..((((.(((.....)))..)).))..)))))-.)))))))))))...... ( -35.50)
>DroAna_CAF1 135736 93 + 1
-----------GGUCCUUGCAUUUGUCAGUCUAGGCAGGCAAUAUGGCU----GCUCAUUUCCUGUGCGCAGAACGGAAGUGAUUUGAGC-UGCCUGCAGGACAAAAAG
-----------.(((((.(((.(((((.((....)).)))))...(((.----(((((..(((((....))).((....))))..)))))-.)))))))))))...... ( -35.90)
>DroPer_CAF1 143311 96 + 1
------AGAGAAAUGCCUGCAUUUGUCAGUCUAGGCAGCCAAUAUGGCUGCCUGCUCAUUUCCUGUGCGCACAGCGGAAGUGAUUUGAGGCAGCUUGCAGGC-------
------........(((((((.(((((....(((((((((.....))))))))).((((((((...((.....)))))))))).....)))))..)))))))------- ( -44.70)
>consensus
___________AGUCCAUGCAUUUGUCAGUCUAGGCAGGCAAUAUGGCU____GCUCAUUUCCUGUGCGCACAGCGGAAGUGAUUUGAGC_UGCCUGCAGGACAUGGAG
...............((((((.(((((......))))).......(((.....(((((..((((.(((.....)))..)).))..)))))..)))))))))........ (-24.81 = -24.87 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:56 2006