| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,508,431 – 18,508,534 |
| Length | 103 |
| Max. P | 0.721550 |
| Location | 18,508,431 – 18,508,534 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 78.67 |
| Mean single sequence MFE | -18.19 |
| Consensus MFE | -14.51 |
| Energy contribution | -14.10 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.721550 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18508431 103 - 23771897 UCCAAUUUUC--CGAC-CCUUUUAACAAUUUUACCCCGAAA----CACCGACCGACUGCCACUCAACAUGAGUGUCACGCAAAUGCAGUUAGCUUAUUUUAUUGGCCAAU .(((((....--....-...................((...----...))...(((((((((((.....)))))..........))))))..........)))))..... ( -14.70) >DroSec_CAF1 132970 103 - 1 ACCAAUUUCA--AGAC-CCUUUUAACAAUUUUACCAAGAAA----CACCCACUUGCUGCCACUCAACAUGGGUGUCACGCAAAUGCAGUUAGCUUAUUUUAUUGGGAAAU ..........--....-........................----..((((.((((((.(((((.....))))).)).))))..((.....)).........)))).... ( -17.30) >DroSim_CAF1 118126 103 - 1 UCCAAUUUCC--CGAC-CCUUUUAACAAUUUUACCCCGAAA----CACCCACUGGCUGCCACUCAACAUGAGUGUCACGCAAAUGCAGUUAGCUUAUUUUAUUGGCCAAU ..........--....-..................((((..----......(((((((((((((.....)))))..........)))))))).........))))..... ( -16.23) >DroEre_CAF1 130109 85 - 1 UCCAAUUCCC--CGAAC-------------------UGGCA----AACUGACUGACUGCCACUCAACAUGAGUGUCACGCAAAUGCAGUUAGCUUAUUUUAUUGGCCAAU .(((((....--.(((.-------------------.(((.----(((((..((..((.(((((.....))))).))..))....))))).)))..))).)))))..... ( -20.20) >DroYak_CAF1 134175 104 - 1 UCCAAUUCCC--CGAACUCUUUUAGCAAUUUUACCCUGAUA----AACUGACUGACUGCCACUCAACAUGAGUGUCACGCAAAUGCAGUUAGCUUAUUUUAUUGGCCAAU ..........--.......................(..(((----((.((((((((((((((((.....)))))..........)))))))).))).)))))..)..... ( -21.70) >DroAna_CAF1 128633 105 - 1 UCCGUGUUCCUGUGAU-CCUUUUA----UCCUGCCCUUAACCUCGGACUGACUGAAUGCCACUCAACAUGAGUGUCACGCAAAUGCAUUCAGCUUAUUUUAUUGGCCAAU ((((.(((...(((((-......)----))..))....)))..))))....(((((((((((((.....)))))..........)))))))).................. ( -19.00) >consensus UCCAAUUUCC__CGAC_CCUUUUAACAAUUUUACCCUGAAA____CACCGACUGACUGCCACUCAACAUGAGUGUCACGCAAAUGCAGUUAGCUUAUUUUAUUGGCCAAU ...................................................(((((((((((((.....)))))..........)))))))).................. (-14.51 = -14.10 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:55 2006