| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,034,148 – 2,034,259 |
| Length | 111 |
| Max. P | 0.816176 |
| Location | 2,034,148 – 2,034,259 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 76.40 |
| Mean single sequence MFE | -35.59 |
| Consensus MFE | -23.46 |
| Energy contribution | -21.28 |
| Covariance contribution | -2.18 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.816176 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2034148 111 + 23771897 CGUCAUCAAUGGCCUUAUCUUCGAUUUCUUGCGGAAUGGGCUCCUCUGCCUUAGGCGUCACUAGCGCUUGUUCGUCAGGAUUUUCAUCCUUAGAAGCCUGAGGUACAGGAC ...........((((..(((.(((....))).)))..))))((((.((((((((((.((....(((......))).(((((....)))))..)).)))))))))).)))). ( -35.90) >DroSec_CAF1 84581 111 + 1 CGUCAUCAAUGGCCUUAUCUUCGAUUUCUUGGGGAAUGGGCUCCUCUGCCUUAGGCUUUACUAGCGCUUGUUCGUCAGGUUUUUCAUCCUUAGAAGCCUGAGGUAUAGGCC ..........(((((..(((((((....)))))))..)))))(((.(((((((((((((....(((......))).(((........)))..))))))))))))).))).. ( -37.20) >DroSim_CAF1 99782 111 + 1 CGUCAUCAAUGGCCUUAUCUUCGAUUUCUUGGGGAAUGGGCUCUUCUGCCUUAGGCUUUACUAGCGCUUGUUCGUCAGGUUUUUCAUCCUUAGAAGCCUGAGGUAUAGGCC .((.......(((((..(((((((....)))))))..((((......)))).)))))......))((((((.(.((((((((((.......)))))))))).).)))))). ( -35.72) >DroEre_CAF1 92975 111 + 1 CGUCAUCGACGGUCUUAUCUUCGGUUUCCUCGGGAAGUGGCUCCUCUGCCUUGGGCUUAACCAGAGCUUGUUCGGCAGGUUCUUCAGCCUUAGGAGCCUGAGGUACAGGAC .((((((((.((......(....)...)))))....)))))((((.(((((..(((((....((((((((.....))))))))..........)))))..))))).)))). ( -39.54) >DroYak_CAF1 87655 111 + 1 CGUCAUCGACGGUCUUAUCUUUGGUUUCUUUGGAAAGGGGUUCCUCUGCCUUGGGUUUCACAACCGCUUGAUCGCUGGGUUCUUCAGACUUGGGAGCCUGAGGUACAGGCC .(((...)))(((((.......((..(((((....)))))..))..(((((..((((((.(((((((......)).))(((.....))))))))))))..))))).))))) ( -34.50) >DroAna_CAF1 83401 111 + 1 CCUCGUCGUCAGACUUAACUUCAGCUGUUUUAGGUUGGGGUUCCUCUUCCUUGGGCUUUACAAUAGCCUCCUCGGUUGGCAAUUCAGGCUGACUUGUUUUCGGGACUGGUU ....(((....)))..((((((((((......))))))))))((..((((..(((((.......)))))....(((..((.......))..))).......))))..)).. ( -30.70) >consensus CGUCAUCAACGGCCUUAUCUUCGAUUUCUUGGGGAAGGGGCUCCUCUGCCUUAGGCUUUACUAGCGCUUGUUCGUCAGGUUUUUCAGCCUUAGAAGCCUGAGGUACAGGCC ..........(((((..((((.((....)).))))..)))))(((.((((((((((.........(((((.....)))))((((.......)))))))))))))).))).. (-23.46 = -21.28 + -2.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:32 2006