Locus 6869

Sequence ID 3L_DroMel_CAF1
Location 18,460,706 – 18,460,802
Length 96
Max. P 0.587164
window11141

overview

Window 1

Location 18,460,706 – 18,460,802
Length 96
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 80.08
Mean single sequence MFE -26.77
Consensus MFE -17.49
Energy contribution -17.36
Covariance contribution -0.13
Combinations/Pair 1.44
Mean z-score -1.41
Structure conservation index 0.65
SVM decision value 0.11
SVM RNA-class probability 0.587164
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18460706 96 - 23771897
AAAGGCCGAUGAUGAGGUUG-AGAU--------AUU-GGUGGGGGAAGAAAAUUCGUAUAGACUGAACGUGAACGACUUGCAACUUUGUCACAUUCCAUCGGCAUU
....((((((((..((((((-....--------.(.-.((..(.(((.....))).)....))..).((....)).....))))))..))).......)))))... ( -23.81)
>DroSec_CAF1 101275 95 - 1
AAAGGCCGAUGAUGAGGUUG-AGAU--------AUUUGUUGGGGGAAGAAAAUUCUUAUAGACUG--CGUGAACGACUUGCAACUUUGUCACAUUCCAUCGGCAUU
....(((((((..(((..((-.(((--------(...((((.(((((((....))))........--((....)).))).))))..)))).))))))))))))... ( -25.70)
>DroSim_CAF1 92135 95 - 1
AAAGGCCGAUGAUGAGGUUG-AGAU--------AUUUGUUGGGGGAAGAAAAUUCUUAUAGACUG--CGUGAACGACUUGCAACUUUGUCACAUUCCAUCGGCAUU
....(((((((..(((..((-.(((--------(...((((.(((((((....))))........--((....)).))).))))..)))).))))))))))))... ( -25.70)
>DroEre_CAF1 99272 93 - 1
AAAGGCCGAUGAUGAGGUUGCAGAU--------AAUGGUUGGG---GGAAAAUUCUUAGAGGCUG--CGUGAACGACUCGCAACUUUGUCACAUUCCAUCGGCAUU
....((((((((..(((((((....--------.........(---(((....)))).(((....--((....)).))))))))))..))).......)))))... ( -29.11)
>DroYak_CAF1 102705 96 - 1
AAAGGCCGAUGAUGAGGUUGGGUGU--------AAUGGUUGAGGGGAGAAAAUUCUUAUAGACUG--CGUGAACGACUCGCAACUUUGUCACAUUCCAUUGGCAUU
....((((((((..((((((.(.((--------...((((...(((((....)))))...)))).--((....)))).).))))))..))).......)))))... ( -26.71)
>DroAna_CAF1 97316 99 - 1
GAAGACCGAUGAUAGGGACGAAAAUGAGAGGAUGUU-GCCGAGGCUA----UGUGGGCGUGGUUG--UGUGAACAACUUGCAACUUUGUCAAAUUCCAUCGGCAUU
...(.((((((..(..((((((..((..((..((((-..((..((((----((....))))))..--))..)))).))..))..))))))...)..)))))))... ( -29.60)
>consensus
AAAGGCCGAUGAUGAGGUUG_AGAU________AUU_GUUGGGGGAAGAAAAUUCUUAUAGACUG__CGUGAACGACUUGCAACUUUGUCACAUUCCAUCGGCAUU
....((((((((((((((((.................(((.....((((....))))...)))....((....)).....))))))))))).......)))))... (-17.49 = -17.36 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:46 2006