Locus 685

Sequence ID 3L_DroMel_CAF1
Location 2,026,957 – 2,027,061
Length 104
Max. P 0.823976
window1049

overview

Window 9

Location 2,026,957 – 2,027,061
Length 104
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 79.68
Mean single sequence MFE -31.82
Consensus MFE -24.79
Energy contribution -25.02
Covariance contribution 0.23
Combinations/Pair 1.26
Mean z-score -1.51
Structure conservation index 0.78
SVM decision value 0.69
SVM RNA-class probability 0.823976
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2026957 104 - 23771897
ACGAUGACGAAGGCGAAUACACCGUCAAGCUUGUCAACCCGGUUGGCGAGGCGGAGGCCAGCCUCCAUUUGGUCAUAAUGCGUAAGUAGCCCUGCUUAUAUUUG
...(((((.((((((.......))))...(((((((((...)))))))))..(((((....)))))..)).))))).....(((((((....)))))))..... ( -34.70)
>DroVir_CAF1 87308 104 - 1
ACGAUGACGAGGGCGAGUAUACGGUUAAGCUUGUAAAUCCUGUGGGUGAGGCAGAAGCCAGCCUACAUUUGGUCAUUAUGCGUAAGUAUAAAAAAUUAAUUACA
..((((((((..((((((.((....)).))))))...)).(((((((..(((....))).)))))))....))))))((((....))))............... ( -30.50)
>DroGri_CAF1 73723 104 - 1
ACGAUGACGAGGGCGAGUACACAGUUAAACUUGUCAAUCCCGUGGGCGAGGCAGAGGCCAGCCUACACUUGGUCAUUAUGCGUAAGUAUAAUUAAUUAAUUACA
..((((((((((((((((..........)))))))......((((((..(((....))).)))))).))).))))))((((....))))............... ( -33.60)
>DroMoj_CAF1 87590 104 - 1
ACGAUGACGAGGGCGAGUACACUGUUAAACUUGUGAAUCCUGUGGGCGAGGCAGAGGCCAGCCUGCACUUGCUCAUUAUGCGUAAGUAUAUAAAAUUAAUUACA
..........((((((((.(((..........)))......(..(((..(((....))).)))..)))))))))..(((((....))))).............. ( -32.30)
>DroAna_CAF1 76434 98 - 1
ACGAUGACGAAGGCGAGUACACCGUCAAGCUUGUCAACCCAGUCGGCGAUGCGGAAGCCAGUCUGCACUUGGUCAUUAUGCGUAAGUAC------UUCGCAAGG
..((((((.(((((((((..........)))))).......((.(((...((....))..))).)).))).)))))).((((.......------..))))... ( -27.30)
>DroPer_CAF1 113372 103 - 1
ACGAUGACGAGGGCGAGUACACGGUGAAGCUGGUGAAUCCCGUGGGCGAGGCAGAGGCCAGCCUACAUUUGGUUAUAAUGCGUAAGUACAACAGCUGCCA-CUG
.....................(((((.(((((.((......((((((..(((....))).))))))............(((....))))).)))))..))-))) ( -32.50)
>consensus
ACGAUGACGAGGGCGAGUACACCGUUAAGCUUGUCAAUCCCGUGGGCGAGGCAGAGGCCAGCCUACACUUGGUCAUUAUGCGUAAGUAUAAAAAAUUAAUUACA
..((((((.(((((((((..........)))))).......((((((..(((....))).)))))).))).)))))).(((....)))................ (-24.79 = -25.02 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:30 2006