Locus 6846

Sequence ID 3L_DroMel_CAF1
Location 18,361,322 – 18,361,427
Length 105
Max. P 0.574807
window11103

overview

Window 3

Location 18,361,322 – 18,361,427
Length 105
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 86.33
Mean single sequence MFE -20.32
Consensus MFE -17.58
Energy contribution -17.31
Covariance contribution -0.28
Combinations/Pair 1.11
Mean z-score -1.49
Structure conservation index 0.87
SVM decision value 0.08
SVM RNA-class probability 0.574807
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18361322 105 + 23771897
UUUUCGUCUGUGAUUUUUACAGCA-----CUU-----CGCUUACAAAUCGCUCGACGUUUGGCGCAGCUUC-----AAACAUAAUCAUAAACUUGUGUUAAUUAUUUUUCAUAUGCCACU
....((((.(((((((.((.(((.-----...-----.))))).)))))))..))))..(((((.......-----.(((((((........)))))))...(((.....)))))))).. ( -20.30)
>DroPse_CAF1 171445 115 + 1
GUUCUGUCUGUGAUUUUUACAGCU-----CCUUCGGCUGCUUACAAAUCGCUCGACAUUUGGCGCAACUUCCACUCGAACAUAAUCAUAAACUUGUGUUAAUUAUUUUUCAUAUGCUGCU
....((((.(((((((.((.(((.-----.(....)..))))).)))))))..))))...((((((...........(((((((........)))))))..............))).))) ( -22.71)
>DroSec_CAF1 145351 105 + 1
UUUCCGUCUGUGAUUUUUAGAGCA-----CUU-----CGCUUACAAAUCGCUCGACGUUUGGCGCAGCUUC-----AAACAUAAUCAUAAACUUGUGUUAAUUAUUUUUCAUAUGCCACU
....((((.(((((((...((((.-----...-----.))))..)))))))..))))..(((((.......-----.(((((((........)))))))...(((.....)))))))).. ( -21.40)
>DroSim_CAF1 156354 105 + 1
UUUCCGUCUGUGAUUUUUACAGCA-----CUU-----CGCUUACAAAUCGCUCGACGUUUGGCGCAGCUUC-----AAACAUAAUCAUAAACUUGUGUUAAUUAUUUUUCAUAUGCCACU
....((((.(((((((.((.(((.-----...-----.))))).)))))))..))))..(((((.......-----.(((((((........)))))))...(((.....)))))))).. ( -20.50)
>DroAna_CAF1 141888 109 + 1
UUUCUGUCUGUGCUUUUUAUUACAACUGCUUU-----CGCUUACAAAUCGCUCGACAUUUGGCGCAGCUUC-----A-ACAUAAUCAUAAACUUGUGUUAAUUAUUUUUCAUAUGCCAAU
.....(.((((((..............((...-----.))...(((((........))))))))))))...-----(-((((((........)))))))..................... ( -14.30)
>DroPer_CAF1 172436 115 + 1
GUUCUGUCUGUGAUUUUUACAGCU-----CCUUCGGCUGCUUACAAAUCGCUCGACAUUUGGCGCAACUUCCACUCGAACAUAAUCAUAAACUUGUGUUAAUUAUUUUUCAUAUGCUGCU
....((((.(((((((.((.(((.-----.(....)..))))).)))))))..))))...((((((...........(((((((........)))))))..............))).))) ( -22.71)
>consensus
UUUCCGUCUGUGAUUUUUACAGCA_____CUU_____CGCUUACAAAUCGCUCGACAUUUGGCGCAGCUUC_____AAACAUAAUCAUAAACUUGUGUUAAUUAUUUUUCAUAUGCCACU
....((((.(((((((.((.(((...............))))).)))))))..))))..(((((.............(((((((........)))))))..............))))).. (-17.58 = -17.31 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:10 2006