| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,359,536 – 18,359,638 |
| Length | 102 |
| Max. P | 0.840895 |
| Location | 18,359,536 – 18,359,638 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.76 |
| Mean single sequence MFE | -21.55 |
| Consensus MFE | -15.07 |
| Energy contribution | -15.35 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.840895 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18359536 102 - 23771897 ---AA--ACAG-------AAUGCAUUCAAAUUUGCCCGAGGAAUCU--GAGACACAUAACUGUCA---CAAACGGACAACCCGUCGGGCCGCAAAU-UGUUUGCAAAAAUAGUAAAUAAA ---..--....-------..((((..(((.((.((((((......(--(.((((......)))).---))..(((.....)))))))))...)).)-))..))))............... ( -24.00) >DroPse_CAF1 169638 113 - 1 UCCAUGCCUAG-------AAUGCAUUCAAAUUUGCCAAAAGAAUCUCGGAGACACAUAACUGUCAAGAAAAAAGGACAACCCGUCGUGCCACAAAUUUGUUUGCGAAAAACCAACUUCUC ...........-------..((((..((((((((......(.....)((.((((......))))..........(((.....)))...)).))))))))..))))............... ( -18.70) >DroSec_CAF1 143582 102 - 1 ---AA--ACAG-------AAUGCAUUCAAAUUUGCCAGAGGAAUCU--GAGACACAUAACUGUCA---CAAAAGGACAACCCGUCGGGCCGCAAAU-UGUUUGCAAAAAUAGGAUAUAAC ---..--....-------..((((..(((.(((((((((....)))--).((((......)))).---.....((....((....)).))))))))-))..))))............... ( -21.50) >DroSim_CAF1 154097 102 - 1 ---AA--ACAG-------AAUGCAUUCAAAUUUGCCAGAGGAAUCU--GAGACACAUAACUGUCA---CAAAAGGACAACCCGUCGGGCCGCAAAU-UGUUUGCAAAAACAGGAUAUAAC ---..--....-------..((((..(((.(((((((((....)))--).((((......)))).---.....((....((....)).))))))))-))..))))............... ( -21.50) >DroAna_CAF1 140075 106 - 1 G--AA--AUGGAUGCAUAAAUGCAUUCAAAUUUGCCAAAAGAAUCG--GAGACACAUAACUGUCA----AAAAGGACAACCCGUCGUGUCGCAAAU-UGUUCAUGG-AUUUGGAUAUA-- .--..--.((((((((....))))))))((((((((....).....--..(((((....((....----...))(((.....))))))))))))))-)(((((...-...)))))...-- ( -24.70) >DroPer_CAF1 170604 113 - 1 GCCAUGCCUAG-------AAUGCAUUCAAAUUUGCCAAAAGAAUCUCGGAGACACAUAACUGUCAAGAAAAAAAGACAACCCGUCGUGCCACAAAUUUGUUUGCGAAAAACCAACUUCUC ...........-------..((((..((((((((......(.....)((.((((......))))..........(((.....)))...)).))))))))..))))............... ( -18.90) >consensus ___AA__ACAG_______AAUGCAUUCAAAUUUGCCAAAAGAAUCU__GAGACACAUAACUGUCA___CAAAAGGACAACCCGUCGGGCCGCAAAU_UGUUUGCAAAAAUAGGAUAUAAC ....................((((..((.((((((...............((((......))))..........(((.....))).....)))))).))..))))............... (-15.07 = -15.35 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:06 2006