Locus 6839

Sequence ID 3L_DroMel_CAF1
Location 18,353,126 – 18,353,227
Length 101
Max. P 0.925308
window11093

overview

Window 3

Location 18,353,126 – 18,353,227
Length 101
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 81.72
Mean single sequence MFE -26.55
Consensus MFE -21.35
Energy contribution -22.02
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.46
Structure conservation index 0.80
SVM decision value 1.17
SVM RNA-class probability 0.925308
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18353126 101 + 23771897
C-C---------UCCCC-AC-CGAAAAAAAGGAUUUCCACCCACUUCUACGAGAAGCUUAUCUUUCGCAGCUUCGUCACUCAAGUGAAACGAGCUGCCAAGAAGUUGAUCGAA
.-.---------.....-..-(((......((....))..(.((((((..((((........))))(((((((..((((....))))...)))))))..)))))).).))).. ( -26.70)
>DroSec_CAF1 137264 99 + 1
CCC---------UUCCCCCC-CGAA-AAAAGGAUUCC---CCACUUCUCCGAGAAGCUUAUCUUUCGCAGCUUCGUCACUCAAGUGAAACGAGCUGCCAAGAAGUUGAUCGAA
.((---------((......-....-..)))).....---.........(((..((((..((((..(((((((..((((....))))...))))))).))))))))..))).. ( -25.60)
>DroSim_CAF1 147569 98 + 1
CCC---------UUCCC-AC-CGAA-AAAAGGAUUCC---CCACUUCUCCGAGAAGCUUAUCUUUCGCAGCUUCGUCACUCAAGUGAAACGAGCUGCCAAGAAGUUGAUCGAA
.((---------((...-..-....-..)))).....---.........(((..((((..((((..(((((((..((((....))))...))))))).))))))))..))).. ( -25.70)
>DroEre_CAF1 132732 100 + 1
CCUCCCCUCCGC---------CGAA-AAAAGGACUCC---CCACUUCUCCGAGGAGCUUAUCUUUCGCAGCUUCGUCACUCAAGUGAAACGAGCUGCCAAGAAGUUGAUCGAA
............---------(((.-...(((.((((---.(........).))))))).((((..(((((((..((((....))))...))))))).))))......))).. ( -26.30)
>DroYak_CAF1 143515 108 + 1
CCUCUACUUCGCUCCCC-UCCAAAA-AAAAGGAUUCC---CCACUUCUCCGAGGAGCUUAUCUUUCGCAGCUUCGUCACUCAAGUGAAACGAGCUGCCAAGAAGUUGAUCGAA
..((.((((((((((..-(((....-....)))....---...(......).))))).........(((((((..((((....))))...)))))))...))))).))..... ( -30.60)
>DroAna_CAF1 132312 95 + 1
U-----C-----UCC---UU-CUCC-AAAAGGUCUCC---CCAUUUUUGCAAGGAGCUUAUCUCAUGGAGCUUCGUCACUCAAGUGAAACGAGCUGCCAAGAAGUUGAUCUAA
(-----(-----..(---((-((..-...(((.((((---.((....))...)))))))......((((((((..((((....))))...))))).))))))))..))..... ( -24.40)
>consensus
CCC_________UCCCC_AC_CGAA_AAAAGGAUUCC___CCACUUCUCCGAGAAGCUUAUCUUUCGCAGCUUCGUCACUCAAGUGAAACGAGCUGCCAAGAAGUUGAUCGAA
..............................((........)).......(((..((((..((((..(((((((..((((....))))...))))))).))))))))..))).. (-21.35 = -22.02 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:01 2006