Locus 6828

Sequence ID 3L_DroMel_CAF1
Location 18,331,758 – 18,331,872
Length 114
Max. P 0.764908
window11077

overview

Window 7

Location 18,331,758 – 18,331,872
Length 114
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 92.28
Mean single sequence MFE -27.15
Consensus MFE -24.90
Energy contribution -24.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.24
Structure conservation index 0.92
SVM decision value 0.51
SVM RNA-class probability 0.764908
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18331758 114 - 23771897
AGGAUAUGGCUCAGGUCAACGGAAGCCAUAAAAUUCUCGUUUGUCACGCGAAAUUUUUCGCUGCU-----UCCCAAAGCA-AAAUGCCAACACAUGCAAAAGACAAAGUUCCAGCGACCC
.(((((((((((.(.....).).))))))).........((((((..(((((....)))))((((-----(....)))))-...(((........)))...))))))..)))........ ( -28.20)
>DroPse_CAF1 140922 109 - 1
AGGAUAUGGCUCAGGUCAACGGAAGCCAUAAAAUUCUCGUUUGUCACGCGAAAUUUUUCGCC--------UCCC-AAGCA-GAAUGCCAACACAUGCAAAAGACAAAGUUCCAGCGAAA-
.(((((((((((.(.....).).))))))).........((((((..(((((....))))).--------....-..(((-...((....))..)))....))))))..))).......- ( -25.80)
>DroEre_CAF1 111789 114 - 1
AGGAUAUGGCUCAGGUCAACGGAAGCCAUAAAAUUCUCGUUUGUCACGCGAAAUUUUUCGCUGCU-----UCCCGCAGCA-AAAUGCCAACACAUGCAAAAGACAAAGUUCCAGCGACCC
.(((((((((((.(.....).).))))))).........((((((..............(((((.-----....))))).-...(((........)))...))))))..)))........ ( -28.60)
>DroYak_CAF1 122405 114 - 1
AGGAUAUGGCUCAGGUCAACGGAAGCCAUAAAAUUCUCGUUUGUCACGCGAAAUUUUUCGCUGCU-----UCCCGCAGCA-AAAUGCCAACACAUGCAAAAGACAAAGUUCCAGCGACCC
.(((((((((((.(.....).).))))))).........((((((..............(((((.-----....))))).-...(((........)))...))))))..)))........ ( -28.60)
>DroAna_CAF1 113982 120 - 1
AGGAUAUGGCUCAGGUCAACGGAAGCCAUAAAAUUCUCGUUUGUCACGCGAAAUUUUUCGCCGCCGCGCCGCCUGCACCAAAAAUGCCAACACAUGCAAAAGACAAAGUUCCAGCGAACC
.(((((((((((.(.....).).))))))).........((((((..(((((....)))))....(((......(((.......))).......)))....))))))..)))........ ( -25.92)
>DroPer_CAF1 141749 109 - 1
AGGAUAUGGCUCAGGUCAACGGAAGCCAUAAAAUUCUCGUUUGUCACGCGAAAUUUUUCGCC--------UCCC-AAGCA-GAAUGCCAACACAUGCAAAAGACAAAGUUCCAGCGAAA-
.(((((((((((.(.....).).))))))).........((((((..(((((....))))).--------....-..(((-...((....))..)))....))))))..))).......- ( -25.80)
>consensus
AGGAUAUGGCUCAGGUCAACGGAAGCCAUAAAAUUCUCGUUUGUCACGCGAAAUUUUUCGCCGCU_____UCCCGAAGCA_AAAUGCCAACACAUGCAAAAGACAAAGUUCCAGCGAACC
.(((((((((((.(.....).).))))))).........((((((..(((((....))))).......................(((........)))...))))))..)))........ (-24.90 = -24.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:46 2006