Locus 6817

Sequence ID 3L_DroMel_CAF1
Location 18,308,656 – 18,308,748
Length 92
Max. P 0.956051
window11065

overview

Window 5

Location 18,308,656 – 18,308,748
Length 92
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.66
Mean single sequence MFE -31.10
Consensus MFE -26.58
Energy contribution -26.22
Covariance contribution -0.36
Combinations/Pair 1.10
Mean z-score -4.30
Structure conservation index 0.85
SVM decision value 1.46
SVM RNA-class probability 0.956051
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18308656 92 + 23771897
---AAUUCCGAGCCAAAGUAAACUAUAAAUUUAUAAUGCGCGAAAGUAAUUUUAUGACUUUGUGGUUUCAGCUUUGGUUUUGGCAAACGCAACAU-------------------------
---....((((((((((((((((((((((.((((((...((....))....)))))).))))))))))..))))))).)))))............------------------------- ( -27.70)
>DroPse_CAF1 112188 119 + 1
CCCGAUUAUGAACCAAAGUAAACUAUAAAUUUAUAAUGCGCGAAAGUAAUUUUAUGACUUUGUGGUUUUAGCUUUGGUUUUGGCACA-GCUAUACGUUUCUAUGUAUCUGUGUAUCUAUG
...(((...((((((((((((((((((((.((((((...((....))....)))))).))))))))))..))))))))))..(((((-(..((((((....))))))))))))))).... ( -37.20)
>DroSec_CAF1 92473 92 + 1
---UAUUGCGAGCCAAAGUAAACUAUAAAUUUAUAAUGCGCGAAAGUAAUUUUAUGACUUUGUGGUUUCAGCUUUGGUUUUGGCAAACGCAACAC-------------------------
---..((((((((((((((((((((((((.((((((...((....))....)))))).))))))))))..))))))))))..)))).........------------------------- ( -30.00)
>DroSim_CAF1 101878 92 + 1
---UAUUGCGAGCCAAAGUAAACUAUAAAUUUAUAAUGCGCGAAAGUAAUUUUAUGACUAUGUGGUUUCAGCUUUGGUUUUGGCAAACGCAACAC-------------------------
---..((((((((((((((((((((((.(.((((((...((....))....)))))).).))))))))..))))))))))..)))).........------------------------- ( -26.50)
>DroAna_CAF1 89368 87 + 1
----AUUGUGGACCGAAGUAAACUAUAAAUUUAUAAUGCGCGAAAGUAAUUUUAUGACUUUGUGGUUUUAGCUUUGGUUUUGGCAAACGCC-----------------------------
----.....((((((((((((((((((((.((((((...((....))....)))))).))))))))))..)))))))))).(((....)))----------------------------- ( -28.00)
>DroPer_CAF1 113266 119 + 1
CCCGAUUAUGAACCAAAGUAAACUAUAAAUUUAUAAUGCGCGAAAGUAAUUUUAUGACUUUGUGGUUUUAGCUUUGGUUUUGGCACA-GCUAUACGUUUCUAUGUAUCUGUGUAUCUGUG
...(((...((((((((((((((((((((.((((((...((....))....)))))).))))))))))..))))))))))..(((((-(..((((((....))))))))))))))).... ( -37.20)
>consensus
___GAUUGCGAACCAAAGUAAACUAUAAAUUUAUAAUGCGCGAAAGUAAUUUUAUGACUUUGUGGUUUCAGCUUUGGUUUUGGCAAACGCAACAC_________________________
.........((((((((((((((((((((.((((((...((....))....)))))).))))))))))..))))))))))..((....)).............................. (-26.58 = -26.22 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:34 2006