Locus 6807

Sequence ID 3L_DroMel_CAF1
Location 18,292,234 – 18,292,326
Length 92
Max. P 0.999856
window11052

overview

Window 2

Location 18,292,234 – 18,292,326
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 96.45
Mean single sequence MFE -25.18
Consensus MFE -24.54
Energy contribution -24.77
Covariance contribution 0.22
Combinations/Pair 1.07
Mean z-score -2.24
Structure conservation index 0.97
SVM decision value 4.27
SVM RNA-class probability 0.999856
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18292234 92 + 23771897
GCCAUUGUUGUUCUGUCGACGUGGAAGCUGCAGGAGUGUAAAUUUAAUUUAGUUAAUUGAAACAAUUUGUUGCAUGCGACAAGCAGCUUGAA
.((((.((((......))))))))(((((((...........(((((((.....))))))).....((((((....)))))))))))))... ( -25.70)
>DroSec_CAF1 76156 92 + 1
GCCAUUGUUGUUCUGUCGACAUGGAAGCUGCAGGAGUGUAAAUUUAAUUUAGUUAAUUGAAACAAUUUGUUGCAUGCGACAAGCAGCUUGAA
.((((.((((......))))))))(((((((...........(((((((.....))))))).....((((((....)))))))))))))... ( -26.10)
>DroSim_CAF1 84167 92 + 1
GCCAUUGUUGUUCUGUCGACAUGGAAGCUGCAGGAGUGUAAAUUUAAUUUAGUUAAUUGAAACAAUUUGUUGCAUGCGACAAGCAGCUUGAA
.((((.((((......))))))))(((((((...........(((((((.....))))))).....((((((....)))))))))))))... ( -26.10)
>DroEre_CAF1 73113 92 + 1
GCCAUUGUUGUUGUGUGGACAUGGAAGCUGCAGGAGUGUAAAUUUAAUUUAGUUAAUUGAAACAAUUUGUUGCAUGCGACAAGCAGCUUGAA
.((((.(((........)))))))(((((((...........(((((((.....))))))).....((((((....)))))))))))))... ( -23.30)
>DroYak_CAF1 82262 92 + 1
GCCAUUGUUGUUGUGUCGACAUGGAAGCUGCAGGAGUGUAAAUUUAAUUUAGUUAAUUGAAACAAUUUGUUGCAUGCGACAAGCGGCUUGAA
.((((.((((......))))))))(((((((...........(((((((.....))))))).....((((((....)))))))))))))... ( -25.40)
>DroAna_CAF1 74252 92 + 1
CCCAUUGUUGUUGUGUCGACAUGGAAGCUGCAGGAGUGUAAAUUUAAUUUAGUUAAUUGAAACAAUUUGUUGCAUGCGACAAGCAGCAACAU
.((((.((((......))))))))..(((((...........(((((((.....))))))).....((((((....)))))))))))..... ( -24.50)
>consensus
GCCAUUGUUGUUCUGUCGACAUGGAAGCUGCAGGAGUGUAAAUUUAAUUUAGUUAAUUGAAACAAUUUGUUGCAUGCGACAAGCAGCUUGAA
.((((.((((......))))))))(((((((...........(((((((.....))))))).....((((((....)))))))))))))... (-24.54 = -24.77 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:21 2006