Locus 6805

Sequence ID 3L_DroMel_CAF1
Location 18,282,296 – 18,282,387
Length 91
Max. P 0.814470
window11050

overview

Window 0

Location 18,282,296 – 18,282,387
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 95.16
Mean single sequence MFE -24.08
Consensus MFE -20.79
Energy contribution -21.15
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -1.73
Structure conservation index 0.86
SVM decision value 0.66
SVM RNA-class probability 0.814470
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18282296 91 + 23771897
CGCAGUGCGCAGGUUGUGCAAACAUUAAAAUUAAUGAAUAACAAUAAAACCAGCUUCGGUAGUCUGAAGUGACUGUUGACGUGCUGUCCAC
.((((..((((((((((.....(((((....)))))....))))).......(((((((....))))))).....))).))..)))).... ( -24.70)
>DroSec_CAF1 66397 91 + 1
CGCAGGGCGCAGGUUGUGCAAACAUUAAAAUUAAUGAAUAACAAUAAAACCAGCUUCGGUAGUCUGAAGUGACUGUUGACGUGCUGUCCAC
....(((((((.((((.(((..(((((....)))))................(((((((....)))))))...))))))).))).)))).. ( -24.10)
>DroSim_CAF1 74032 91 + 1
CGCAGGGCGCAGGUUGUGCAAACAUUAAAAUUAAUGAAUAACAAUAAAACCAGCUUCGGUAGUCUGAAGUGACUGUUGACGUGCUGUCCAC
....(((((((.((((.(((..(((((....)))))................(((((((....)))))))...))))))).))).)))).. ( -24.10)
>DroEre_CAF1 63465 91 + 1
GGCAGUGCGCAGGUUGUGCAAACAUUAAAAUUAAUGAAUAACAAUAAAACCAGCUUCGGUAGUCUGAAGUGACUGCUGACGUGCUGUCCAC
(((((..(((.((((.((....(((((....))))).....))....)))).)).(((((((((......))))))))).)..)))))... ( -31.20)
>DroYak_CAF1 72571 91 + 1
CGCAGUGCGCAGGUUGUGCAAACAUUAAAAUUAAUGAAUAACAAUAAAAGCAGCUUCGGUAGUCUGAAGUGACUGUUGACGUGCUGUCCAC
.((((..((((((((((.....(((((....)))))....)))))...((..(((((((....)))))))..)).))).))..)))).... ( -26.00)
>DroAna_CAF1 65769 87 + 1
CGCA----GCAGGUUGUGCAAACAUUAAAAUUAAUGAAUAACAAUAAAACCAGCUACGGUAGUCUGAAGUGAAUGUUGACGUGAUGUCCCU
((((----(((((((.((....(((((....))))).....))....)))).(((.(((....))).)))...))))).)).......... ( -14.40)
>consensus
CGCAGUGCGCAGGUUGUGCAAACAUUAAAAUUAAUGAAUAACAAUAAAACCAGCUUCGGUAGUCUGAAGUGACUGUUGACGUGCUGUCCAC
.((((..((((((((((.....(((((....)))))....))))).......(((((((....))))))).....))).))..)))).... (-20.79 = -21.15 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:19 2006