Locus 6790

Sequence ID 3L_DroMel_CAF1
Location 18,239,187 – 18,239,307
Length 120
Max. P 0.967087
window11032

overview

Window 2

Location 18,239,187 – 18,239,307
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 80.12
Mean single sequence MFE -25.64
Consensus MFE -18.14
Energy contribution -18.78
Covariance contribution 0.64
Combinations/Pair 1.15
Mean z-score -2.29
Structure conservation index 0.71
SVM decision value 1.61
SVM RNA-class probability 0.967087
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18239187 120 + 23771897
UUACUUUUCUGUCCUUUUUCGAUUUAAUACCCCUCAAUCGAUGAGCUUAUUCCACUCUUUGAUAACUUUUACAGCAAUUGGUAUACAGCUUAGACUCUAAGCUGAACGGAAUAACUCAUC
.......................................((((((.((((((((((..(((.............)))..)))...((((((((...))))))))...))))))))))))) ( -26.92)
>DroSec_CAF1 21898 120 + 1
UUACUCUUCUGUUCUGUUUGGAUUUAAAACCCCUCAAUCGAUGAGCUUAAUCCACUCUUUGAUAACUUUUACAGCAAUUGGUCUAGGGUUUAGACUCUAAGCUGAACGGAAUAACUCAUC
......((((((((.(((((((((((((..((((..((((((..((((((..................))).))).))))))..)))))))))).))))))).))))))))......... ( -30.97)
>DroSim_CAF1 27838 120 + 1
UUACUCUUCUGUCCCUUUUGGAUUUAAGACCCCUCAAUCGAUGAGCUUAAUCCACUCUUUGAUAACUUUUACAGCAAUUGGUCCAGGGCUUAGACUCUAAGCUGAACGGAAUAACUCAUC
....((((..((((.....))))..))))..........((((((.(((.((((((..(((.............)))..)))....(((((((...)))))))....))).))))))))) ( -25.72)
>DroEre_CAF1 22018 106 + 1
-------------CCUUGUCGAUUUAAUGCC-CCCAAUCGGAGAGCUUAUUCCACUCUUUGAUAACUCAUACAGCAAAUGUUCUAGGGCUUAGACUCUAAGCUGAACGGAGUAACUCAUC
-------------.....((((((.......-...)))))).(((.(((((((......(((....)))..........((((...(((((((...)))))))))))))))))))))... ( -23.70)
>DroYak_CAF1 28803 102 + 1
------------------UGAAUUGAAUACCACUCUAACGAAGAGCUUAUUCCACUAUUUGAUAGCUCAUACAGCAAAUGGUCGAAGGCUUAGACUCCAAGCUGAACGGAAUAACUCAUC
------------------...............((....)).(((.(((((((......(((....)))..((((....((((.........))))....))))...))))))))))... ( -20.90)
>consensus
UUACU_UUCUGU_CCUUUUGGAUUUAAUACCCCUCAAUCGAUGAGCUUAUUCCACUCUUUGAUAACUUUUACAGCAAUUGGUCUAGGGCUUAGACUCUAAGCUGAACGGAAUAACUCAUC
.......................................((((((.((((((((((..(((.............)))..)))....(((((((...)))))))....))))))))))))) (-18.14 = -18.78 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:02 2006