Locus 6779

Sequence ID 3L_DroMel_CAF1
Location 18,213,992 – 18,214,097
Length 105
Max. P 0.608192
window11013

overview

Window 3

Location 18,213,992 – 18,214,097
Length 105
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 82.60
Mean single sequence MFE -31.44
Consensus MFE -24.75
Energy contribution -25.51
Covariance contribution 0.76
Combinations/Pair 1.12
Mean z-score -1.56
Structure conservation index 0.79
SVM decision value 0.15
SVM RNA-class probability 0.608192
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18213992 105 + 23771897
GCCAGUGUGGUUUGGCACUGCCACUUGUGGCACGAUCACAGU----UACAGCACACUAACACAAGGGCAACAACUUUCGCAUUAGGCCAAAUCAACAACAUCAGCAACA-----------
((..((((((((((((..((((.((((((.............----.............))))))))))....((........))))))))))....))))..))....----------- ( -27.87)
>DroPse_CAF1 145964 120 + 1
GCCAGUGUUAUUUGGCUUUGCCACUUGUGGCACGAACACACCGCUGUGUGGCACACUAACACAAGGGCAACAACUUUCGCAUUAGGCCAGGCCAACAGCAGCGGCAGCAGCAGUACCAGC
(((..((((..(((((((.(((.((((((.......(((((....))))).........))))))(....).............))).))))))).))))..)))............... ( -37.69)
>DroSec_CAF1 115581 105 + 1
GCCAGUGUGGUUUGGCACUGCCACUUGUGGCACGAUCACAGU----UACAGCACACUAACACAAGGGCAACAACUUUCGCAUUAGGCCAAAUCAACAACAUCAGCAACA-----------
((..((((((((((((..((((.((((((.............----.............))))))))))....((........))))))))))....))))..))....----------- ( -27.87)
>DroEre_CAF1 117472 105 + 1
GCCAGUGUCGCUUGGCACUGCCACUUGUGGCACGAUCACAGU----UACAGCACACCAACACAAGGGCAACAACUUUCGCAUUAGGCCAAAUCAACAACAUCGGCAACA-----------
(((.((((.(.(((((..((((.((((((.............----.............))))))))))....((........))))))).....).)))).)))....----------- ( -26.07)
>DroPer_CAF1 135129 120 + 1
GCCAGUGUUAUUUGGCUUUGCCACUUGUGGCACGAACACACCGCUGUGUGGCACACUAACACAAGGGCAACAACUUUCGCAUUAGGCCAGGCCAACAGCAGCGGCAACAGCACUACCAGC
(((..((((..(((((((.(((.((((((.......(((((....))))).........))))))(....).............))).))))))).))))..)))............... ( -37.69)
>consensus
GCCAGUGUGGUUUGGCACUGCCACUUGUGGCACGAUCACAGU____UACAGCACACUAACACAAGGGCAACAACUUUCGCAUUAGGCCAAAUCAACAACAUCGGCAACA___________
(((.((((.(((((((..((((.((((((..............................))))))))))....((........))))))))).....)))).)))............... (-24.75 = -25.51 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:44 2006