Locus 6775

Sequence ID 3L_DroMel_CAF1
Location 18,197,171 – 18,197,261
Length 90
Max. P 0.617051
window11008

overview

Window 8

Location 18,197,171 – 18,197,261
Length 90
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 84.10
Mean single sequence MFE -19.92
Consensus MFE -14.89
Energy contribution -15.29
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.65
Structure conservation index 0.75
SVM decision value 0.17
SVM RNA-class probability 0.617051
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18197171 90 - 23771897
UCGUGGCACACACACAGAGCAGUGGCUUUGUCC-CCAGCUGUAC-CAUUACCACACAGAACCA--------------------CACUCUGAGUACCACUUCGCCUCCA-ACUU
..((((.((.....(((((..((((.(((((..-..........-.........))))).)))--------------------).))))).)).))))..........-.... ( -18.30)
>DroSec_CAF1 99005 88 - 1
UCGUGGCACA--CACAGAGCAGUGGCUUUGUCCCCCAGCUGUACCCAGUACCACACAGAACGG--------------------CACUCUGAAUCCCACUU---CUCCAAACUU
..((((....--.(((((((....)))))))......((((....)))).)))).((((....--------------------...))))..........---.......... ( -18.70)
>DroSim_CAF1 99815 83 - 1
UCGUGGCGCA--CACAGAGCAGUGGCUUUGUUC-CCAGCUGUAC-CAGUACCACACAGAACCG--------------------CACUCUGA-UCCCACU----CUCCA-ACUU
..((((.(..--..(((((..((((.(((((..-...((((...-)))).....))))).)))--------------------).))))).-.))))).----.....-.... ( -21.60)
>DroEre_CAF1 100872 85 - 1
UCGUGGCACA--CACAGAGCAGUGGCUUUGUCC-CCAGCUGUAC-CAGUACCACACAGAACCG--------------------CACUCUGAAUCCCACUU---CUCCA-ACUU
..((((....--..(((((..((((.(((((..-...((((...-)))).....))))).)))--------------------).)))))....))))..---.....-.... ( -21.60)
>DroYak_CAF1 104823 105 - 1
UCGUGGCACA--CACAGAGCAGUGGCUUUGUCC-CCAGCUGUAC-CAGUACCACACAGAACCACACAGAACCACAGAGCACCACACGCUGAAUCCCACUU---CUCCA-ACUU
..(((.....--))).(((.(((((.(((((..-....((((..-.........))))......))))).......(((.......))).....))))).---)))..-.... ( -19.40)
>consensus
UCGUGGCACA__CACAGAGCAGUGGCUUUGUCC_CCAGCUGUAC_CAGUACCACACAGAACCG____________________CACUCUGAAUCCCACUU___CUCCA_ACUU
..((((.......(((((((....)))))))......((((....)))).)))).((((...........................))))....................... (-14.89 = -15.29 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:39 2006