| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,186,074 – 18,186,189 |
| Length | 115 |
| Max. P | 0.960465 |
| Location | 18,186,074 – 18,186,189 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.52 |
| Mean single sequence MFE | -18.37 |
| Consensus MFE | -18.39 |
| Energy contribution | -17.40 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.17 |
| Structure conservation index | 1.00 |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.960465 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18186074 115 + 23771897 UUCAAGCUUUAAAAUAAGCAUGUCAAAAAAUUGGAAAUUGUAUCCAAAA-ACAUUAGGAGAAAAAGGUCUUACUGACAUU----AAUGUCAUGAAUAUAACCGAUACAUAUAUAAAAUAA .....((((......)))).((((......(((((.......)))))..-...............(((..((.(((((..----..)))))....))..))))))).............. ( -16.20) >DroSec_CAF1 88125 120 + 1 UUUAAGCUUUAAAUUGAGUAUUACAAAGAAUUGGAAAUUAUAUUCCAAAAAAUUUCGGAGAAAAAUGUCUUACUGGCAUAUAUGUAUGUCAUGAAUAUAACCGAUACAUACAUACAAUAA .....((((......))))...........((((((......))))))................(((((.....))))).(((((((((..((........))..)))))))))...... ( -18.90) >DroSim_CAF1 88813 119 + 1 UUUAAGCUUAAAAUUGAGUUUUACAAAGAAUUGGAAAUUAUAUUCCAAA-AAUUUCGGAGAAAAAUGUCUUACUGGCAUAUAUGUAUGUCAUGAAUAUAACCGAUACAUACAUACAAUAA ...(((((((....))))))).........((((((......)))))).-..............(((((.....))))).(((((((((..((........))..)))))))))...... ( -20.00) >consensus UUUAAGCUUUAAAUUGAGUAUUACAAAGAAUUGGAAAUUAUAUUCCAAA_AAUUUCGGAGAAAAAUGUCUUACUGGCAUAUAUGUAUGUCAUGAAUAUAACCGAUACAUACAUACAAUAA .....((((......))))..........(((((...((((((((............((((......))))..(((((((....))))))).)))))))))))))............... (-18.39 = -17.40 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:36 2006