Locus 6771

Sequence ID 3L_DroMel_CAF1
Location 18,184,996 – 18,185,111
Length 115
Max. P 0.789392
window11004

overview

Window 4

Location 18,184,996 – 18,185,111
Length 115
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 81.40
Mean single sequence MFE -22.66
Consensus MFE -13.12
Energy contribution -13.99
Covariance contribution 0.87
Combinations/Pair 1.09
Mean z-score -2.59
Structure conservation index 0.58
SVM decision value 0.58
SVM RNA-class probability 0.789392
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18184996 115 - 23771897
CCAUGAUCGCUAAGCGAUUUUCCCUUUUCCUUUGUGCAAUCUACAUAUGUAUCUAUGUAUAUGUAUGUCUGCAGGUAUAAUCACUAUAC---UAUAUACAUACUAUAUCAGACUAAUC
....((((((...))))))..............(((((...((((((......))))))..)))))(((((..((((((.....)))))---)(((((.....))))))))))..... ( -19.80)
>DroSec_CAF1 87007 103 - 1
CCACGGUCG-----CGAUUUUUCCUUUUUCUUUGUGCAAUGUAUGUAUGU----------AUGCAUGUCUGCACAUAUAAUCAAUAUAUAUGUAGACACAUACUAUAUCAGACUAAUC
....(((((-----((..................)))..((.(((((.((----------(((..((((((((.(((((.....))))).)))))))))))))))))))))))).... ( -24.47)
>DroSim_CAF1 87714 108 - 1
CCACGAUCGCUAAGCGAUUUUUCCUUUUUCUUUGUGCAAUGUAUGUAUGU----------AUGCAUGUCUGCACAUAUAAUCAAUAUAUAUGUAGAUACAUACUAUAUCAGACUAAUC
.(((((.....(((.((....))))).....)))))...((.(((((.((----------(((..((((((((.(((((.....))))).))))))))))))))))))))........ ( -23.70)
>consensus
CCACGAUCGCUAAGCGAUUUUUCCUUUUUCUUUGUGCAAUGUAUGUAUGU__________AUGCAUGUCUGCACAUAUAAUCAAUAUAUAUGUAGAUACAUACUAUAUCAGACUAAUC
....((((((...))))))...........((((....(((((.((((((................(((((((.(((((.....))))).))))))))))))))))))))))...... (-13.12 = -13.99 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:35 2006