| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,131,188 – 18,131,289 |
| Length | 101 |
| Max. P | 0.751715 |
| Location | 18,131,188 – 18,131,289 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 82.72 |
| Mean single sequence MFE | -26.00 |
| Consensus MFE | -19.99 |
| Energy contribution | -21.35 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.751715 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18131188 101 + 23771897 UUUCCAGCAAGU--U---AAAGUGGUAUGGGAAUUACAUUGCAGACAAACGAGACAAGUUUCUUACAUUUGUGUACAUGUUCCAUGUGCCACUUAUCCACAUUCAA- ............--.---.(((((((((((((((.....((((((.....((((....)))).....)))))).....))))).))))))))))............- ( -22.70) >DroSec_CAF1 34128 101 + 1 UUUCCAGCAAGU--U---AAAGUGGCAUGGGAAUUACAUUGCAGACAAACGAGACAAGUUUCUUACAUUUGUGUGCAUGUUCCAUGAGCCACUUAUCCACAUUCAA- ............--.---.(((((((...(((((.....((((.(((((.((((......))))...))))).)))).)))))....)))))))............- ( -27.50) >DroSim_CAF1 31713 100 + 1 UUU-CAGCAAGU--U---AAAGUGGUAUGGGAUUUACAUUGCAGACAAACGAGACAAGUUUCUUACAUUUGUGUGCAUGUUCCAUGAGCCACUUAUCCACAUUCAA- ...-........--.---.((((((((((((((......((((.(((((.((((......))))...))))).)))).)))))))..)))))))............- ( -26.40) >DroEre_CAF1 34650 101 + 1 CUUCCUGCAGGU--U---UAACUGGUAUGGGAGUUACAUUGCAGACAAACGAGACAAGUUUCUUACAUUUGUGUGCAUGUUCCAUGAGCCACUUAUCCACAUUUAA- .........((.--.---(((.(((((((((....((((.(((.(((((.((((......))))...))))).))))))))))))..)))).))).))........- ( -23.40) >DroYak_CAF1 35293 99 + 1 U--UCUGCAAGU--U---UAAGUGGUAUGGGAAUUACAUUGCAGACAAACGAGACAAGUUUCUUACAUUUGUGUGCAUGUUCCAUGAGCCACUUAUCCACAUUCAA- .--.......(.--.---((((((((...(((((.....((((.(((((.((((......))))...))))).)))).)))))....))))))))..)........- ( -28.80) >DroPer_CAF1 45860 97 + 1 UAACCCGCACCGCUUCGGGGAGUGGC-UGACAGCGACAUCGCC---------GACAAGUUUCUUACAUUUGUGUGCAUGUUUCAAGAGCCACUUACAUCCAUGCGAG .....(((((((...))).(((((((-(....(.(((((.((.---------.((((((.......))))))..))))))).)...)))))))).......)))).. ( -27.20) >consensus UUUCCAGCAAGU__U___AAAGUGGUAUGGGAAUUACAUUGCAGACAAACGAGACAAGUUUCUUACAUUUGUGUGCAUGUUCCAUGAGCCACUUAUCCACAUUCAA_ ...................((((((((((((....((((.(((.(((((.((((......))))...))))).))))))))))))..)))))))............. (-19.99 = -21.35 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:20 2006