| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,120,854 – 18,121,058 |
| Length | 204 |
| Max. P | 0.707917 |
| Location | 18,120,854 – 18,120,963 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 83.24 |
| Mean single sequence MFE | -32.14 |
| Consensus MFE | -22.31 |
| Energy contribution | -24.15 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.69 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.509726 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18120854 109 - 23771897 GCAUUCGAGAGGCACAAUAUAGCGAACAAUCCUUUAAGGAUGACAGCCCUGCCCCAAAUGCAGUUUACGAUGAUGCAGCUCCUCCGCAGCGAGGAGCUCGUGUUAUCUU (((((.(.(.((((.......((.....((((.....))))....))..)))))).))))).......((((((((((((((((......)))))))).)))))))).. ( -37.70) >DroSec_CAF1 24082 109 - 1 GCAUUCGAGAGGCACUAUAUAACGAACAAUCCUUUAAGGAUGACAGCCCUGCCCCAAAUGCAGUUUACGAUGAUGCAGCUCCUCCGCAGCGAGGAGCUCGUGUUAUCUU (((((.(.(.(((((........)....((((.....))))........)))))).))))).......((((((((((((((((......)))))))).)))))))).. ( -34.70) >DroSim_CAF1 21637 109 - 1 GCAUUCGAGAGGCACAAUAUAACGAGCAAUCCUUUAAGGAUGACAGCCCUGCCCCAAAUGCAGUUUACGAUGAUGCAGCUCCUCCGCAGCGAGGAGCUCGUGUUAUCUU (((((.(.(.((((.........(.((.((((.....))))....)).))))))).))))).......((((((((((((((((......)))))))).)))))))).. ( -36.20) >DroEre_CAF1 24844 109 - 1 GCAUUCGAGAGGCACAACAUAACCAACAGUCCUUUAACGAUGACAGCCCAGCCCCAAAUGCAGUUUACGAUGAUGCAGCUCCUCCGCAGCGGGGAGCUCGUGUUAUCUU (((((.(.(.(((...............((......))..((......))))))).))))).......((((((((((((((.(((...))))))))).)))))))).. ( -30.80) >DroYak_CAF1 24747 109 - 1 GUAUUCGCGAGGCACAAUAUAACCAACAGUCCUUUAAGGAUGAGAGUCCUGUUCCAAAUGCAGUUUACGAUGAAGCAGCUCCUCCGCAGCGAGGAGCUCGUGUUAUCUU (((..(((((((.((.............))))))..(((((....))))).........)).)..)))(((((.((((((((((......)))))))).)).))))).. ( -33.52) >DroAna_CAF1 35558 97 - 1 GGAUUCGAGAAAAUCAAUACAA---------CUUCAAAGAUGAAUCCCCU---CCUAACGCGGUUUAUGAGGACGCUGCUCCACCACAACGCGGUGCAAGAGUGAUAUU ((((((((.....)).......---------((....))..))))))(((---(.(((......))).)))).((((.((.((((.......))))..))))))..... ( -19.90) >consensus GCAUUCGAGAGGCACAAUAUAACGAACAAUCCUUUAAGGAUGACAGCCCUGCCCCAAAUGCAGUUUACGAUGAUGCAGCUCCUCCGCAGCGAGGAGCUCGUGUUAUCUU (((((.(.(.(((...............((((.....))))(......).))))).))))).......((((((((((((((((......)))))))).)))))))).. (-22.31 = -24.15 + 1.84)
| Location | 18,120,963 – 18,121,058 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 82.74 |
| Mean single sequence MFE | -27.72 |
| Consensus MFE | -17.74 |
| Energy contribution | -18.78 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.707917 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18120963 95 - 23771897 AGAACAGUUCCGAGAGGAACAACUCCGAGAAGAGGAAGUUCGCAGAGAGCAGCUUCGAGAAGAAGAAAUCCAGAGGCAGCAGGCUCAAAUUCUGC .((((.(((((....)))))...(((.......))).))))(((((((((.(((((..((........))..))))).....))))....))))) ( -33.00) >DroSec_CAF1 24191 95 - 1 ACAACAGUUCCGAGAGGAACAACUUCGAGAAGAGGAAGUUCGCAGGGAGCAACUUCGGGAAGAAGAAAUCCGGAGGCAGCAGGCUCAGAUCCUGC ......(((((....)))))((((((........)))))).(((((((((..((((.(((........))).))))......))))....))))) ( -32.90) >DroSim_CAF1 21746 95 - 1 ACAACAGUUCCGAGACGAACAACUCAGAGAAGAGGAAGUUCGCAGGGAGCAACUUCGGGAAGAAGAAAUCCGGAGGCAGCAGGCUCAGAUCCUGC ......(((((..(.(((((..(((......)))...))))))..)))))..((((.(((........))).))))..(((((.......))))) ( -30.10) >DroEre_CAF1 24953 77 - 1 AC------------------AGCUCCGAGAAGAGGAGGUUCGCAGGGAGCAACUUCGGGAAGAUGAAAUCCGGAGGCAGCAGGCUCAGAUCCAGC ..------------------..((((.......))))....((.((((((..((((.(((........))).))))......))))....)).)) ( -19.50) >DroYak_CAF1 24856 95 - 1 ACAACAGUACCUAGAUGAACAACUCCGGGAAGAGGAGGUUCGCAGGGAGAAACUUCGGGAAGAUAAAAUCCUCAGGGAGCAGGCUCAGAUUCUGC .........(((.(.(((((..((((.......)))))))))).)))((((.(((.((((........)))).)))(((....)))...)))).. ( -23.10) >consensus ACAACAGUUCCGAGAGGAACAACUCCGAGAAGAGGAAGUUCGCAGGGAGCAACUUCGGGAAGAAGAAAUCCGGAGGCAGCAGGCUCAGAUCCUGC ................((((..(((......)))...))))(((((((((..((((.(((........))).))))......))))....))))) (-17.74 = -18.78 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:18 2006