Locus 6731

Sequence ID 3L_DroMel_CAF1
Location 18,004,749 – 18,004,869
Length 120
Max. P 0.557802
window10946

overview

Window 6

Location 18,004,749 – 18,004,869
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 91.67
Mean single sequence MFE -26.40
Consensus MFE -21.67
Energy contribution -22.05
Covariance contribution 0.38
Combinations/Pair 1.14
Mean z-score -1.49
Structure conservation index 0.82
SVM decision value 0.05
SVM RNA-class probability 0.557802
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18004749 120 + 23771897
AAAAAUACAAACAUCGAGCUGGGCGAAGUUCUAUUCUAUAUGGUGUAUACUAAUAGGUACCUUGGGAAUUGGAUACUCGAUUUAUUUUAUAAUCGAUAUAGACAAAUAUAUCCAAAUUGU
......((((.....(((((......)))))..(((((...((((..((....))..)))).))))).(((((((.((((((........))))))(((......)))))))))).)))) ( -21.40)
>DroSec_CAF1 127973 120 + 1
AAAAAUACAAACAUCGAGCUGGGCGAAGUUCUAUUCUAUAUGGUGCAUACUAAUAGGUACCUUGGGAAUUGGAUACUCGCUGUAUUUUAUAAUUGAUAUAGACAAAUAUAUCAAAAUUGU
.(((((((...((......))(((((.((((.(((((....(((((..........)))))...))))).))))..))))))))))))....((((((((......))))))))...... ( -29.30)
>DroSim_CAF1 138829 120 + 1
AAAAAUUCAAACAUCGAGCUGGGCGAAGUUCUAUUCUAUAUGGUGCAUACUAAUAGGUACUUUGGGAAUUGGAUACUCGAUGUAUUUUAUAAUUGAUAUAGACAAAUAUAUCAAAAUUGU
..........(((((((((..(.((((((((((((...((((...))))..)))))).))))))....)..)...)))))))).........((((((((......))))))))...... ( -26.50)
>DroEre_CAF1 129864 120 + 1
GAGCAUACCAACAUUGAGCUGGGCGAAGUUCUAUUCCAUAUGGUGCAUACUUAUAGGUACCUUGGGUAUCGGAUACUCGAUGUAUUUUAUAAUUGAUAUAGACGAGUAUAUAAAAAUGGU
...(((.((......(((((......)))))...((((...(((((..........))))).))))....))(((((((.((((((........))))))..)))))))......))).. ( -28.40)
>consensus
AAAAAUACAAACAUCGAGCUGGGCGAAGUUCUAUUCUAUAUGGUGCAUACUAAUAGGUACCUUGGGAAUUGGAUACUCGAUGUAUUUUAUAAUUGAUAUAGACAAAUAUAUCAAAAUUGU
......((((((((((((((......)).((((((((....(((((..........)))))...))))).)))..)))))))).........((((((((......))))))))..)))) (-21.67 = -22.05 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:38 2006