Locus 6730

Sequence ID 3L_DroMel_CAF1
Location 18,002,454 – 18,002,549
Length 95
Max. P 0.749886
window10945

overview

Window 5

Location 18,002,454 – 18,002,549
Length 95
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 73.47
Mean single sequence MFE -23.60
Consensus MFE -6.83
Energy contribution -7.88
Covariance contribution 1.06
Combinations/Pair 1.08
Mean z-score -2.35
Structure conservation index 0.29
SVM decision value 0.47
SVM RNA-class probability 0.749886
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18002454 95 - 23771897
CCUUCGAUCGCUUCUGUUGCCCCAAAACUUCCA-------ACAACUAGC-UGCGAUUCGAAUCGCGGCUGUACUCGAAUCU--------------GCAAUCUGCAUUCCCUUCAAUA
..(((((..((...(((((............))-------)))...(((-((((((....)))))))))))..)))))..(--------------((.....)))............ ( -21.90)
>DroPse_CAF1 131938 85 - 1
CUCCCCCCCACCUCUAUGGAG--GGAACUCUCU----GC-CCAACUCGAACGCGAAUCG---CGCGGCUGUACUCC--------------------CCAUCUGCAUGGCAG--GGCC
...(((.(((......))).)--))....((((----((-(..........(((...))---)((((.((......--------------------.)).))))..)))))--)).. ( -26.10)
>DroSec_CAF1 125651 98 - 1
CCCUCGAUCACUUCUGUUGCCCCAAAACUUCCA----ACAACAACUAGC-AGCGAUUCGAAUCGCGGCUGUACUCGAAUCU--------------GCAAUCUGCAUUCCCUUCAAUA
...((((.......(((((..............----.)))))..((((-.(((((....))))).))))...))))...(--------------((.....)))............ ( -17.26)
>DroSim_CAF1 136475 98 - 1
CCUUCGAUCGCUUCUGUUGCCCCAAAACUUCCA----GCAACAACUAGC-UGCGAUUCGAAUCGCGGCUGUACUCGAAUCU--------------GCAAUCUGCAUUCCCUUCAAUA
..(((((..((...((((((.............----))))))...(((-((((((....)))))))))))..)))))..(--------------((.....)))............ ( -25.52)
>DroEre_CAF1 127543 95 - 1
CCUCCGAUCGCUUCCAUUGCCCCAAAACUG-------GCAACAACUAGC-UGCGAUUCGAAUCGCGGCUGUACUCGAAUCU--------------GCAAUCUGCAUUCCCUUCAAUA
.....(((.((.....(((((........)-------))))....((((-((((((....))))))))))...........--------------)).)))................ ( -23.30)
>DroYak_CAF1 133211 116 - 1
CCUUCGAUCGCCUCUGCCACCCCGAAACUUGCAACUUGCAACAACUAGC-UGCGAUUCGCUUCGCGGCUGUACUCGAAUCUGCAAACUGCAAUCUGCAAUCUGCAUUCCCUUCCAUA
..((((...((....)).....))))...((((..(((((.....((((-(((((......)))))))))..........(((.....)))...)))))..))))............ ( -27.50)
>consensus
CCUUCGAUCGCUUCUGUUGCCCCAAAACUUCCA____GCAACAACUAGC_UGCGAUUCGAAUCGCGGCUGUACUCGAAUCU______________GCAAUCUGCAUUCCCUUCAAUA
.............................................((((.((((((....)))))))))).........................((.....))............. ( -6.83 =  -7.88 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:37 2006