Locus 6724

Sequence ID 3L_DroMel_CAF1
Location 17,972,565 – 17,972,658
Length 93
Max. P 0.832238
window10938

overview

Window 8

Location 17,972,565 – 17,972,658
Length 93
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 84.09
Mean single sequence MFE -25.82
Consensus MFE -18.95
Energy contribution -19.05
Covariance contribution 0.10
Combinations/Pair 1.10
Mean z-score -2.95
Structure conservation index 0.73
SVM decision value 0.72
SVM RNA-class probability 0.832238
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17972565 93 + 23771897
AGGCUGGCAGCUGCCGC----AGACCAUGGCAUAAAAACAGCACACACCGAUUGAUAUCUCAGUCGGUAAUAAGUGCAGAAAAGCCAUAAAAAUAAC
.(((((((....)))((----........)).........((((..(((((((((....))))))))).....)))).....))))........... ( -28.70)
>DroSim_CAF1 103532 93 + 1
AGGCUGGCAGCUGCCGC----AGACCAUGGCAUAAAAACAGCACACACAGAUUGAUAUCUCAGUCGGUAAUAAGUGCAGAAAAGCCAUAAAAAUAAU
.((((.....(((((..----..(((.((((.........)).))....((((((....))))))))).....).))))...))))........... ( -23.40)
>DroEre_CAF1 97449 93 + 1
AGGCUGGCAGCUGCCGC----AGACCGUGGCAUAAAAACAGCGCACAGCGAUUGAUAUCUCAGUCGGUAAUAAGUGCAGAAAAGCCAUAAAAAUAAC
.((((..(...((((((----.....))))))..........(((((.(((((((....))))))).).....)))).)...))))........... ( -28.20)
>DroWil_CAF1 137905 93 + 1
AGGCUGACAGCUGCCGGACGGAGGCC---GCAUCCGAAA-GCCAAAUAAGAUUGAUAUCUCGGGCGGUAAUAAGUGCAGAAAAGCCAUAAAAAUAAC
.((((.....(((((((((((...))---)..))))...-(((.....((((....))))..)))..........))))...))))........... ( -25.00)
>DroYak_CAF1 101741 93 + 1
AGGCUGGCAGCUGCCGC----AGACCGUGGCAUAAAAACAGCGCACACAGAUUGAUAUCUCAGUCGGUAAUAAGUGCAGAAAAGCCAUAAAAAUAAC
.((((.....(((((..----..((((((((.........)).)))...((((((....))))))))).....).))))...))))........... ( -27.30)
>DroAna_CAF1 91001 82 + 1
AGGCUGACAGCUGCCUC----CUACCAGGC-----------CUCUCUCAGAUUGAUAUCUCAGUCGGUAAUAAGUGCAGAAAAGCCAUAAAAAUAAC
.((((.....((((((.----.((((.((.-----------.....)).((((((....))))))))))...)).))))...))))........... ( -22.30)
>consensus
AGGCUGGCAGCUGCCGC____AGACCAUGGCAUAAAAACAGCACACACAGAUUGAUAUCUCAGUCGGUAAUAAGUGCAGAAAAGCCAUAAAAAUAAC
.((((.....(((((........(((...((.........)).......((((((....))))))))).....).))))...))))........... (-18.95 = -19.05 +   0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:30 2006