| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,961,642 – 17,961,737 |
| Length | 95 |
| Max. P | 0.661053 |
| Location | 17,961,642 – 17,961,737 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 82.55 |
| Mean single sequence MFE | -18.18 |
| Consensus MFE | -14.58 |
| Energy contribution | -14.17 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.661053 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17961642 95 - 23771897 UCAUUUU--CAUUUU--AUUUGAUAUUCG-UCCGAUCGUGUUUAUUUUUAUUGGCACAAUUAUUUGUGCAUUUUAGAAAUUUAUUAAGCGGCCAAAGACC .......--......--...........(-.(((.....((..(((((((...((((((....))))))....)))))))..))....))).)....... ( -16.50) >DroPse_CAF1 91319 95 - 1 CCAGUCC--CCCCUU--AGA-GACUCUCGUUCCGAUCGUGUUUAUUUUUAUUGGCACAAUUAUUUGUGCAUUUUAGAAAUUUAUUAGGCGGCCAAAGACC ...(((.--......--.(.-.((....))..)(..(((.(..(((((((...((((((....))))))....))))))).....).)))..)...))). ( -18.80) >DroEre_CAF1 86736 95 - 1 UCAUUUU--CAUUUU--AUUUGCUUUUCA-UCCGAUCGUGUUUAUUUUUAUUGGCACAAUUAUUUGUGCAUUUUAGAAAUUUAUUAGGCGGCCAAAGACC .......--......--.....((((...-.(((.((......(((((((...((((((....))))))....)))))))......)))))..))))... ( -16.50) >DroWil_CAF1 122794 86 - 1 -----------UUUU--AGUUU-UUUUUGUUGUGAUCGUGUUUAUUUUUAUUGGCACAAUUAUUUGUGCAUUUUAGAAAUUUAUUAAGCGUUCAAAGACC -----------....--.....-.....(((.(((.(((....(((((((...((((((....))))))....))))))).......))).)))..))). ( -16.50) >DroAna_CAF1 80336 99 - 1 UUAUUUGACUAUUUUCGAUUCGAUUUUUG-UCCGGUCGUGUUUAUUUUUAUUGGCACAAUUAUUUGUGCAUUUUAGAAAUUUAUUAAGCGGCCAAAGACC ......(((.....(((...))).....)-)).((((((....(((((((...((((((....))))))....))))))).......))))))....... ( -23.90) >DroPer_CAF1 85112 89 - 1 ------C--CCCCUC--AGA-GACUCUCGUUCCGAUCGUGUUUAUUUUUAUUGGCACAAUUAUUUGUGCAUUUUAGAAAUUUAUUAGGCGGCCAAAGACC ------.--(((((.--(((-.((..(((...)))..)).)))(((((((...((((((....))))))....))))))).....))).))......... ( -16.90) >consensus UCAUUUC__CAUUUU__AGUUGAUUUUCG_UCCGAUCGUGUUUAUUUUUAUUGGCACAAUUAUUUGUGCAUUUUAGAAAUUUAUUAAGCGGCCAAAGACC ...............................(((.....((..(((((((...((((((....))))))....)))))))..))....)))......... (-14.58 = -14.17 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:23 2006