| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,949,020 – 17,949,112 |
| Length | 92 |
| Max. P | 0.816230 |
| Location | 17,949,020 – 17,949,112 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 89.55 |
| Mean single sequence MFE | -25.53 |
| Consensus MFE | -23.25 |
| Energy contribution | -23.37 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.816230 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17949020 92 - 23771897 AAUCCAUAUGGGCGUGUCAAGCGGAGGCGGGCAAUGCUAACGCACACAGUGCGUAUGGAUAAUAUUAUAGAUAGAUAGGCAUAUACAUAAUU .(((((((((.((((((...(((..((((.....))))..))))))).)).)))))))))...(((((..(((........)))..))))). ( -27.80) >DroSec_CAF1 71993 84 - 1 --UCCAUAUGGGCGUGUCAAGCGGAGGCGGGCCGUGCUAACGCACACAGUGCGUAUGGGUAAUAUUGUAGAUAGA--GGCAC----AUAAUU --(((((((((((.((((.......)))).)))((((....))))......))))))))................--.....----...... ( -27.00) >DroSim_CAF1 74275 84 - 1 --UCCAUAUGGGGGUGUCAAGCGGAGGCGGGCAGUGCUAACGCACACAGUGCGUAUGGGUAAUAUUGUAGAUAGA--GGCAU----AUAAUU --((((((((.(.((((...(((..((((.....))))..)))))))..).))))))))....((((((......--....)----))))). ( -21.80) >consensus __UCCAUAUGGGCGUGUCAAGCGGAGGCGGGCAGUGCUAACGCACACAGUGCGUAUGGGUAAUAUUGUAGAUAGA__GGCAU____AUAAUU ..((((((((.((((((...(((..((((.....))))..))))))).)).))))))))................................. (-23.25 = -23.37 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:18 2006