Locus 6702

Sequence ID 3L_DroMel_CAF1
Location 17,872,521 – 17,872,619
Length 98
Max. P 0.856600
window10905 window10906

overview

Window 5

Location 17,872,521 – 17,872,619
Length 98
Sequences 3
Columns 101
Reading direction forward
Mean pairwise identity 91.42
Mean single sequence MFE -28.00
Consensus MFE -23.95
Energy contribution -24.70
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -2.45
Structure conservation index 0.86
SVM decision value 0.81
SVM RNA-class probability 0.856600
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17872521 98 + 23771897
ACUCAAUUCGGUUGCCAACGAGUACAGCUGUUGCUGUAGUUGUUGUUCUUGUAGUCGUCUAUACUGCCGU---CGAUUUGUUGGCACCUUCAACUUUUGAU
..((((...(((((.((((((.((((((....)))))).))))))....(((((....))))).(((((.---........)))))....))))).)))). ( -28.60)
>DroSim_CAF1 41565 101 + 1
ACUCAAUUCGGUUGCCAACGAGUACAGCUGUUGCUGUUGUUGUUGUUCUUGUAGUCGUCUAUACUGCCGUUUUCGAUUUGUUGGCACCUUCAACUUUUGAU
.........(((.(((((((((((((((....))))).............(((((.......)))))........)))))))))))))............. ( -26.60)
>DroEre_CAF1 39374 94 + 1
ACUCAAUUCGGUUGCCAACGAGUACAGCUGUUGCUGUAGUUGUUGUU------GUCGUCUAUAC-GCCGUUUUCGAUUUGUUGGCACCUCCAACUUUCGAU
........((((...((((((.((((((....)))))).))))))..------...((....))-))))...((((...(((((.....)))))..)))). ( -28.80)
>consensus
ACUCAAUUCGGUUGCCAACGAGUACAGCUGUUGCUGUAGUUGUUGUUCUUGUAGUCGUCUAUACUGCCGUUUUCGAUUUGUUGGCACCUUCAACUUUUGAU
.........(((.(((((((((((((((....))))).............(((((.......)))))........)))))))))))))............. (-23.95 = -24.70 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 17,872,521 – 17,872,619
Length 98
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 91.42
Mean single sequence MFE -23.33
Consensus MFE -21.03
Energy contribution -21.03
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.07
Structure conservation index 0.90
SVM decision value 0.72
SVM RNA-class probability 0.831107
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17872521 98 - 23771897
AUCAAAAGUUGAAGGUGCCAACAAAUCG---ACGGCAGUAUAGACGACUACAAGAACAACAACUACAGCAACAGCUGUACUCGUUGGCAACCGAAUUGAGU
.............(((((((((...((.---..((..((....))..))....))........((((((....))))))...)))))).)))......... ( -22.50)
>DroSim_CAF1 41565 101 - 1
AUCAAAAGUUGAAGGUGCCAACAAAUCGAAAACGGCAGUAUAGACGACUACAAGAACAACAACAACAGCAACAGCUGUACUCGUUGGCAACCGAAUUGAGU
.............(((((((((...........((..((....))..))...............(((((....)))))....)))))).)))......... ( -21.40)
>DroEre_CAF1 39374 94 - 1
AUCGAAAGUUGGAGGUGCCAACAAAUCGAAAACGGC-GUAUAGACGAC------AACAACAACUACAGCAACAGCUGUACUCGUUGGCAACCGAAUUGAGU
.((((...((((...(((((((...........(.(-((....))).)------.........((((((....))))))...))))))).)))).)))).. ( -26.10)
>consensus
AUCAAAAGUUGAAGGUGCCAACAAAUCGAAAACGGCAGUAUAGACGACUACAAGAACAACAACUACAGCAACAGCUGUACUCGUUGGCAACCGAAUUGAGU
.............(((((((((..........((..........))..................(((((....)))))....)))))).)))......... (-21.03 = -21.03 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:59 2006