Locus 6699

Sequence ID 3L_DroMel_CAF1
Location 17,865,681 – 17,865,798
Length 117
Max. P 0.629094
window10902

overview

Window 2

Location 17,865,681 – 17,865,798
Length 117
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 70.71
Mean single sequence MFE -40.00
Consensus MFE -11.91
Energy contribution -12.17
Covariance contribution 0.25
Combinations/Pair 1.40
Mean z-score -2.05
Structure conservation index 0.30
SVM decision value 0.20
SVM RNA-class probability 0.629094
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17865681 117 + 23771897
ACGAUAGCAAUGGCAAUUGAAUCUACGGCCACCUUUGGUACAAGAUCCAAGCGCGGAAGAACUGGCUCCGGUAAGCCACUGGGUAUUUUUCCCACUGGAUUUACGUUGUAAUCGACA
.((((.((((((((..(((.((((...((((....))))...)))).)))..))(((((((...((.(((((.....))))))).)))))))...........)))))).))))... ( -36.20)
>DroVir_CAF1 278300 117 + 1
ACUAUUGCAAUGGCAAUAGAAUCAACUGCUACCAGUGGGACCAGAUCCAGACGUGGUAAUGUUGGAUUUGGCAAUCCUCUUGGUAUUGUACCUACUAACUGCACAUUAAACUCUUCG
.(((((((....))))))).......(((....((((((.((((((((((.(((....)))))))))))))((((((....)).))))..))))))....))).............. ( -37.50)
>DroPse_CAF1 28257 117 + 1
ACGACGGCAAUGGCAAUCGAGUCGAGGGCCACCUUCGGCACCAGGUCGAGCCGGGGCAGAACGGGCUCCGGCAAGCCGCUGGGUAUCACUCCCACCAGCUGCACAUUGAACUGCGGC
.((.(((((((((((.....((((((((...))))))))....(((...((((((((.......))))))))..)))(((((............)))))))).)))))..))))).. ( -49.80)
>DroWil_CAF1 32795 117 + 1
ACAAUUGCUAUGGCAAUAGAGUCCACGGCCACUUUGGGUAUUAGAUCCAAACGUGGCAGAGUUGGUUCUGGCAAACCACUUGGGAUGACACCAACCAAUUCCACGGCGAACUCUUGA
...(((((....)))))(((((.(.((((((((((((((.....))))))).))))).(((((((((...(((..((....))..)).)...)))))))))..))..).)))))... ( -41.10)
>DroYak_CAF1 49020 117 + 1
ACUAUAGCAAUGGCAAUCGAAUCCACAGCCACCUUUGGUACAAGAUCCAAGCGCGGCAGAGCGGGUUCUGGUAAGCCACUGGGUAUUGUUCCCACUGGAUUGACGUUGUACUCAACA
......((((((.(((((((((((.(.(((.(.(((((........))))).).)))...).))))))........((.((((.......)))).))))))).))))))........ ( -35.80)
>DroAna_CAF1 28328 117 + 1
ACAAUGGCGAUGGCAAUCGAAUCCACUGCCACCUUGGGCACCAAGUCCAGGCGCGGCAGCACUGGCUCCGGCAGACCACUGGGAAUAUUCCCCACCAGAUUCACCUGGUACUCCUGA
....(((((((....))))......(((((..(((((((.....)))))))...((.(((....)))))))))).)))..((((....)))).(((((......)))))........ ( -39.60)
>consensus
ACAAUAGCAAUGGCAAUCGAAUCCACGGCCACCUUUGGUACCAGAUCCAAGCGCGGCAGAACUGGCUCCGGCAAGCCACUGGGUAUUAUUCCCACCAGAUUCACGUUGAACUCCUCA
.......(((((...............(((.((((.(((.....))).))).).)))....((((....((....))..((((.......)))))))).....)))))......... (-11.91 = -12.17 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:55 2006