| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,803,500 – 17,803,594 |
| Length | 94 |
| Max. P | 0.937358 |
| Location | 17,803,500 – 17,803,594 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 78.99 |
| Mean single sequence MFE | -41.55 |
| Consensus MFE | -24.82 |
| Energy contribution | -25.60 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.60 |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.937358 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17803500 94 + 23771897 CAGGAAUCGGAGGCCCCGGAACAGGCGUCAUGGUCUGUGGAGUAUGAAGCUUCUGGGUCU-CU---------UCGACUGGCGGCGAAGAAGAAAGCCGCCAC-----G-U ......(((((((.((((((...(((.(((((.((....)).))))).))))))))).).-))---------)))).(((((((..........))))))).-----.-. ( -41.10) >DroVir_CAF1 29808 106 + 1 CAGAC---GCACCACGCGUAAUCGACGCCACGGACUGACGGGCUU-CAGCUUCUGGCGCUGCUUGGACUGGUUCAGCUGCCGGCGACGACGGCGUCAGCCACGCAAGGCU ...((---((.....))))....((.(((.((......))))).)-)(((..(((((((((.(((..(((((......)))))...))))))))))))...(....)))) ( -39.30) >DroSec_CAF1 28005 94 + 1 CAGGAAUCGGAGGCCCCGGAACAGACGACAUGGUCUGUGGAGCAUGAAGCUUCUGGGUCU-CU---------UCGACUGGCGGCGAAGAAGAAAGCUGCCAC-----G-U ......((((((((((....((((((......))))))(((((.....))))).))))))-).---------.))).(((((((..........))))))).-----.-. ( -38.20) >DroSim_CAF1 26710 94 + 1 CAGGAAUCGGAGGCCCCGGAACAGACGACAUGGUCUGUGGAGCAUGAAGCUUCUGGGGCU-CU---------UCGACUGGCGGCGAAGAAGAAAGCCGCCAC-----G-U ......((((((((((((((((((((......))))))..(((.....))))))))))).-))---------)))).(((((((..........))))))).-----.-. ( -47.40) >DroEre_CAF1 27138 94 + 1 CAGGAAUCGGAGGCCCAGGAAUAGGCGACAUGGCCUGUGGAGCAUGAAGCUUCUGGGUCU-CU---------UCGACUGGCGGCGGAGAAGAAAGCCGCCCC-----G-U ..((..((((((((((((..((((((......)))))).((((.....))))))))))))-).---------.)))..((((((..........))))))))-----.-. ( -43.30) >DroYak_CAF1 32200 94 + 1 CAGGAAUCGGAGGCCCAGGAACAGGCGACAUGGUCUGUGGAGCAUGAAGCUCCUGGGUCU-CU---------UCGACUGGCGGCGGAGAAGAAAGCAGCCCC-----G-U (((.....((((((((((((....((..((((.((....)).))))..))))))))))))-))---------....)))((((.((............))))-----)-) ( -40.00) >consensus CAGGAAUCGGAGGCCCCGGAACAGACGACAUGGUCUGUGGAGCAUGAAGCUUCUGGGUCU_CU_________UCGACUGGCGGCGAAGAAGAAAGCCGCCAC_____G_U ........(.((((((....((((((......))))))(((((.....))))).)))))).)................((((((..........)))))).......... (-24.82 = -25.60 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:34 2006