| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,793,111 – 17,793,203 |
| Length | 92 |
| Max. P | 0.687404 |
| Location | 17,793,111 – 17,793,203 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 83.93 |
| Mean single sequence MFE | -30.57 |
| Consensus MFE | -20.61 |
| Energy contribution | -22.17 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.687404 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17793111 92 + 23771897 -GGUGGCCA--CACUGGCC-GGAUGUCGGCAUUGGCCAAUGGCCAUGCAUAAAAUUAGGUUAGUGGGUGAGACAUAAUUAAGUUAUGGGCUCGCAU----- -.((((((.--((((((((-.(((....((((.((((...)))))))).....))).)))))))).......((((((...))))))))).)))..----- ( -35.90) >DroSec_CAF1 18347 92 + 1 -GGUGGCCA--CACUGGCC-GGAUGUCGGUAUUGGCCAAUGGCCAUGCAUAAAAUUAGGUUAGUGGGUGAGACAUAAUUAAGUUAUAGGGUCGCAU----- -.((((((.--((((((((-.(((....((((.((((...)))))))).....))).)))))))).....(((........)))....))))))..----- ( -32.50) >DroSim_CAF1 16963 92 + 1 -GGUGGCCA--CACUGGCC-GGAUGUCGGCAUUGGCCAAUGGCCAUGCAUAAAAUUAGGUUAGUGGGUGAGACAUAAUUAAGUUAUAGGGUCGCAU----- -.((((((.--((((((((-.(((....((((.((((...)))))))).....))).)))))))).....(((........)))....))))))..----- ( -34.50) >DroEre_CAF1 18176 92 + 1 -GGUGGGCA--CACUGGCC-GGAUGUCGGCAUUGGCCAAUGGCCAUGCAUAAAAUUAGGUUAGUGGGUGAGGCAUAAUUAAGUUAUGGGGUCGCAU----- -.((((.(.--((((((((-.(((....((((.((((...)))))))).....))).)))))))).......((((((...)))))).).))))..----- ( -31.90) >DroYak_CAF1 18393 75 + 1 ---------------------GAUGUCGGCAUUGGCCAAUGGCCAUGCAUAAAAUUAGGUUAGUGGGUGAGGCAUAAUUAAGUUAUGGGGUCGCAU----- ---------------------(((.(((((((.((((...)))))))).......(((.(((((..(((...))).))))).)))))).)))....----- ( -18.40) >DroAna_CAF1 18348 94 + 1 UGGCUGGCAUGCUCUGGCCAGGAUGCCGGCAUUGG-------CCAUGCAUAAAAUUAGGUUAGUGGGUGAGAUAUAAUUAAGUUAUGGGGUCACCUGAUUU ..((((((((.((......)).))))))))(((((-------((.............)))))))((((((..((((((...))))))...))))))..... ( -30.22) >consensus _GGUGGCCA__CACUGGCC_GGAUGUCGGCAUUGGCCAAUGGCCAUGCAUAAAAUUAGGUUAGUGGGUGAGACAUAAUUAAGUUAUGGGGUCGCAU_____ ...........((((((((.........((((.((((...)))))))).........)))))))).((((..((((((...))))))...))))....... (-20.61 = -22.17 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:33 2006