| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,746,468 – 17,746,571 |
| Length | 103 |
| Max. P | 0.506110 |
| Location | 17,746,468 – 17,746,571 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.22 |
| Mean single sequence MFE | -37.20 |
| Consensus MFE | -29.11 |
| Energy contribution | -29.33 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.78 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.506110 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17746468 103 - 23771897 ---AGGCUUAGGCUGUCAGCGAGCUGCAGCUUAAAGCCUUAAAA-CG--GAGCCG--GUCCGACCACAUGGCGGAUGCGUGACAUUGCAUAACUCACUUUGCCGAA---------GGGAU ---((((((((((((.(((....))))))))).)))))).....-((--(((..(--(((((.((....)))))(((((......))))).)))..)))))((...---------.)).. ( -37.10) >DroPse_CAF1 25437 120 - 1 UCCGGGCUUACGCUGUCAGCGAGCUGCAGUUUAAAGCCUGCAAAACGCACAGCCAAAGCCAGACCUCAUGGCGGAUGCGUGACAUUGCAUAACUCACUUUGUCGAAGCAUGCAAGGGGAG ...((((((..((((.(((....)))))))...))))))((((.(((((...((...((((.......)))))).)))))....))))....(((.((((((........)))))).))) ( -39.50) >DroYak_CAF1 10662 103 - 1 ---AGGCUUAGGCUGUCAGCGAGCUGCAGCUUAAAGCCUUCAAA-CG--AAGCCA--GUCCGACCACAUGGCGGAUGCGUGACAUUGCAUAACUCACUUUGCCGAC---------GGGAU ---((((((((((((.(((....))))))))).)))))).....-((--(((..(--(((((.((....)))))(((((......))))).)))..)))))((...---------.)).. ( -35.00) >consensus ___AGGCUUAGGCUGUCAGCGAGCUGCAGCUUAAAGCCUUCAAA_CG__AAGCCA__GUCCGACCACAUGGCGGAUGCGUGACAUUGCAUAACUCACUUUGCCGAA_________GGGAU ...((((((((((((.(((....))))))))).)))))).............((.....(((.((....)))))(((((......))))).........................))... (-29.11 = -29.33 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:15 2006