Locus 6668

Sequence ID 3L_DroMel_CAF1
Location 17,740,561 – 17,740,681
Length 120
Max. P 0.911074
window10854

overview

Window 4

Location 17,740,561 – 17,740,681
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.44
Mean single sequence MFE -30.25
Consensus MFE -24.67
Energy contribution -24.05
Covariance contribution -0.62
Combinations/Pair 1.16
Mean z-score -2.56
Structure conservation index 0.82
SVM decision value 1.07
SVM RNA-class probability 0.911074
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17740561 120 + 23771897
AUUUUCCAUGACUGCAAAUGUGCAUAUUUAUGAGUGAGGGCAGUCAAAAAUUCAUAAGCAGGCAAUGCGCCAAAAAUCAUUUGCAAAAUCCAAAUGAUCCCUGUGCCCCAAUUGAAAGAA
.((((((((((.((((....))))...)))))..((.(((((..................(((.....)))....((((((((.......)))))))).....)))))))...))))).. ( -26.60)
>DroSec_CAF1 21770 119 + 1
AUUUUCCAUCACUGCAAAUGUGCAUAUUUAUAAGUGAGGGCAGUCAAAAAUUCAUAAGCAGGCAAUACGCCAAAAAUCAUUUGCGAAAUCCAAAUGAUG-CUGUGCCCCAAUUGAAAGAA
.(((((..(((((..(((((....)))))...)))))(((((..............(((.(((.....)))....((((((((.(....))))))))))-)).))))).....))))).. ( -28.06)
>DroSim_CAF1 25023 119 + 1
AUUUUCCAUGACUGCAAAUGUGCAUAUUUAUGAGUGAGGGCAGUCAAAAAUUCAUAAGCAGGCAAUACGCCAAAAAUCAUUUGCAAAAUCCAAAUGAUG-CUGUGCCCCAAUUGAAAGAA
.(((((..(((((((.......(((....))).......)))))))......((((.((.(((.....)))....((((((((.......)))))))))-)))))........))))).. ( -28.14)
>DroEre_CAF1 36521 119 + 1
AUUUUCCAUGACUGCAAAUGCGCAUAUUUAUGAGCGAGGGCAGUCAAAAAUGCAUAAGCAGGCAAUUCGCCAAAAAUCGUUUGCAAAAUCCGAAUGAUG-CUGUGUCCCAGUUGGAAGAC
.((((((((((((((...(((.(((....))).)))...))))))).....(((((.((.(((.....)))....((((((((.......)))))))))-))))))......))))))). ( -38.20)
>consensus
AUUUUCCAUGACUGCAAAUGUGCAUAUUUAUGAGUGAGGGCAGUCAAAAAUUCAUAAGCAGGCAAUACGCCAAAAAUCAUUUGCAAAAUCCAAAUGAUG_CUGUGCCCCAAUUGAAAGAA
.((((((((((.(((......)))...)))))(((..(((((..................(((.....)))....((((((((.......)))))))).....)))))..)))))))).. (-24.67 = -24.05 +  -0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:08 2006