Locus 6651

Sequence ID 3L_DroMel_CAF1
Location 17,709,641 – 17,709,732
Length 91
Max. P 0.722188
window10815

overview

Window 5

Location 17,709,641 – 17,709,732
Length 91
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 82.37
Mean single sequence MFE -21.50
Consensus MFE -18.99
Energy contribution -19.10
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.24
Structure conservation index 0.88
SVM decision value 0.40
SVM RNA-class probability 0.722188
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17709641 91 - 23771897
-------------------------CCUUUUUGAGCUAAUAAUAAAGUU-UUUGUACUGUACCCUCUGUUUUCUCAGUGUAUAGGUACAAAAACCACGUAUGCGGCUGGCUAGACAC
-------------------------........(((((........(((-((((((((((((...(((......))).))))).))))))))))..((....))..)))))...... ( -22.90)
>DroSec_CAF1 84578 112 - 1
UUC-----UUGUGAAUCUUUUCCCUCUUUUUUGAGCUAAUAAUAUAGUUUUUUGUACUGUACCCUCUGUUUUCUCAGUGUAUAGGUACAAAAACCACGUAUCCGGCUGGCUAGACAC
.((-----(.((.(..(......(((......)))...........(.((((((((((((((...(((......))).))))).))))))))).)........)..).)).)))... ( -20.70)
>DroSim_CAF1 81326 117 - 1
AUCAUGAAUUGUGAAUCUUUUCCCUCUUUUUUGAGCUAAUAAUAAAGUUUUUUGUACUAUACCCUCUGUUUUCUCAGUGUAUAGGUACAAAAACCACGUAUCCGGCUGGCUAGACAC
.((((.....))))...................(((((........(.((((((((((((((...(((......))).))))).))))))))).).((....))..)))))...... ( -20.90)
>consensus
_UC_____UUGUGAAUCUUUUCCCUCUUUUUUGAGCUAAUAAUAAAGUUUUUUGUACUGUACCCUCUGUUUUCUCAGUGUAUAGGUACAAAAACCACGUAUCCGGCUGGCUAGACAC
.................................(((((........(.((((((((((((((...(((......))).))))).))))))))).).((....))..)))))...... (-18.99 = -19.10 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:31 2006