Locus 6641

Sequence ID 3L_DroMel_CAF1
Location 17,676,066 – 17,676,163
Length 97
Max. P 0.998365
window10800

overview

Window 0

Location 17,676,066 – 17,676,163
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 92.99
Mean single sequence MFE -25.88
Consensus MFE -21.30
Energy contribution -21.98
Covariance contribution 0.68
Combinations/Pair 1.06
Mean z-score -3.04
Structure conservation index 0.82
SVM decision value 3.08
SVM RNA-class probability 0.998365
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17676066 97 - 23771897
GUUUCUGUGAAGAUUUUAAUUGACUUUUUGCGGUUCAAUCGAUUGUUUAAUUCAUUUCGAAGACAAUUUGGUUGGUCAACGAAAAAUUCAUAGAAAC
(((((((((((..((((..(((((...........((((((((((((...(((.....)))))))).))))))))))))..)))).))))))))))) ( -25.00)
>DroSec_CAF1 58176 97 - 1
GUUUCUGUGAAGAUUUUAAUUGACUUUUUGCGGUUGAAUCGAUUGUUUAAUUCACUUGCCAGACAAAUUGGUUGGUCAAGUAAAAAUUCAUAGAAAC
(((((((((((..(((((.((((((....((((.(((((..(....)..))))).))))..(((......))))))))).))))).))))))))))) ( -27.90)
>DroSim_CAF1 53238 97 - 1
GUUUCUGUGAAGAUUUUAAUUGACUUUUUGCGGUUGAAUCGAUUGUUUAAUUCACUUGGCAGACAAUCUGGUUGGUCAAGUAAAAAUUCAUAGAAAC
(((((((((((..(((((.(((((..(((((.(.(((((..(....)..)))))..).)))))((((...))))))))).))))).))))))))))) ( -28.60)
>DroEre_CAF1 48510 97 - 1
GUUUCUGUGAAGAUUUUAAUUGACUUUUUGCGGUUCAAUCGAUUGUUUAAUUUACUUGACAGACAAUUGGGUUGGUCAACUAAAAAUGCAUAGAAAC
(((((((((....(((((.(((((......(((..((((.(.(((((..........))))).).))))..)))))))).)))))...))))))))) ( -23.60)
>DroYak_CAF1 34170 97 - 1
GCUUCUGUGAAGAUUUUAAUUGACUUUUUGCGGUUCAAUCGAUUGUUUAAUUUACUUGACAGACAAUUUGGUUGGUCAAGUAAAAAUGCAUAGAAAU
..(((((((.((((.(..(((((((......)).)))))..)..))))..((((((((((.(((......))).))))))))))....))))))).. ( -24.30)
>consensus
GUUUCUGUGAAGAUUUUAAUUGACUUUUUGCGGUUCAAUCGAUUGUUUAAUUCACUUGACAGACAAUUUGGUUGGUCAAGUAAAAAUUCAUAGAAAC
(((((((((((..(((((.((((((...........((((((((((((............)))))))).)))))))))).))))).))))))))))) (-21.30 = -21.98 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:17 2006