Locus 6633

Sequence ID 3L_DroMel_CAF1
Location 17,650,598 – 17,650,696
Length 98
Max. P 0.954236
window10789

overview

Window 9

Location 17,650,598 – 17,650,696
Length 98
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 71.40
Mean single sequence MFE -24.15
Consensus MFE -9.64
Energy contribution -11.25
Covariance contribution 1.61
Combinations/Pair 1.38
Mean z-score -2.26
Structure conservation index 0.40
SVM decision value 1.44
SVM RNA-class probability 0.954236
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17650598 98 - 23771897
GUGUCUUUAAUUAAAUUGCAGCGCAGUUUGAAUAACGAACUGCGUUGGCAUUGGAGCUGGCAUUUCCACUUCAUGGCCUAUAAGCUAUAUGCUGUUGA
..................((((((((((((.....))))))))))))((((.((((.(((.....)))))))(((((......)))))))))...... ( -30.00)
>DroPse_CAF1 23921 86 - 1
AGCUCUUUAAUUAAAUUGAAAUAGAGUACAAACAGAGCUCC------CCUUUGGAGCUG----CUCCUCUCAAUGACCCCCCAAUGAUA--CAUACAC
.((((((((((...)))))...)))))........((((((------.....)))))).----......(((.((......)).)))..--....... ( -13.80)
>DroSec_CAF1 27469 98 - 1
GUGUCUUUAAUUAAAUUGCAGCGCAGUUUGAAUAAAGAACUGCCUUGGCAUUGGAUAUGGUAUUUCCACUCCAUGGGCUAUAAGCUAUAUGCACUUCA
(((((((((.(((((((((...))))))))).))))))...((..((((..((((..(((.....))).))))...))))...))......))).... ( -26.70)
>DroSim_CAF1 27207 87 - 1
GUGUCUUUAAUUAAAUUGCAGCGCAGUUUGAAUAAAGAACUGCGUUGGCAUUGGAUAUGGUAUUUCCACUCCAUGGCCUAUAAGCUA-----------
.................((((((((((((.......))))))))))(((..((((..(((.....))).))))..))).....))..----------- ( -26.00)
>DroEre_CAF1 23677 95 - 1
GUGUCUUUAAUUAAAUUGCAACGCAGUUUAAAUAAUGAACUGUGUUACCAUUGAAGU-GGCAUUUGCACUCCAUGAACUGUAAGCUAGA--CAGCCAA
.(((((.........(((((((((((((((.....)))))))))))..(((.((.((-(.(....)))))).)))....))))...)))--))..... ( -21.60)
>DroYak_CAF1 8286 96 - 1
GUGUCUUUAAUUAAAUUGCAACGCAGUUUAAACAGUAAACUGUGUUGGCAUUGAAGUUGGCAUUUGCACUUCAUGACCUAUAAGCUAGA--CAGCUAA
.(((((....(((...((((((((((((((.....))))))))))).))).((((((..((....)))))))).......)))...)))--))..... ( -26.80)
>consensus
GUGUCUUUAAUUAAAUUGCAACGCAGUUUAAAUAAAGAACUGCGUUGGCAUUGGAGAUGGCAUUUCCACUCCAUGACCUAUAAGCUAUA__CAGCUAA
..................(((((((((((.......)))))))))))....(((((............)))))......................... ( -9.64 = -11.25 +   1.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:07 2006