| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,966,972 – 1,967,064 |
| Length | 92 |
| Max. P | 0.756262 |
| Location | 1,966,972 – 1,967,064 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 77.28 |
| Mean single sequence MFE | -28.72 |
| Consensus MFE | -13.82 |
| Energy contribution | -13.33 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.756262 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1966972 92 - 23771897 AAAACGGA-AACGGGGUCAAUCGAUAUUGUCCAUUU-----GGUGGCCGCCA---------------GUUGGUAAUGGCUGCCAAAGGUUAAAUGCG-AAUAGAAUUCGCCCAU- ....((..-..))((((...(((.((((..((.(((-----((..((((((.---------------...)))...)))..)))))))...))))))-)...(....)))))..- ( -32.60) >DroVir_CAF1 19582 101 - 1 AAAACGGA-AUUGGGGUCAAUCGAUAUUGUCCGUUGCAACGGGCUGCCGCAACGU------------ACAUAUAAUGGCUGCCAAAGGUUAAAUGUGGAAUAGAAUUCUCGCAC- ........-.(((((((((....((((.((.((((((...((....)))))))).------------))))))..))))).))))........((((((((...)))).)))).- ( -23.30) >DroWil_CAF1 27769 110 - 1 AAAACGGAAAACGGGGUCAAUCGAUAUUGUCCAUUU-----GGUGGCCACCGCCAAUAGUAGUAGUUGUUGGUAAUGGCUGCCAAAGGUUAAAUGCGCAAUAGAAUUUUUAUACC ....((.....)).((.((((....)))).)).(((-----((..((((..((((((((......))))))))..))))..)))))(((.((((.(......).))))....))) ( -31.50) >DroMoj_CAF1 21215 101 - 1 AAAAGAGA-AUCGGGGUCAAUCGAUAUUGUCCAUUGCAGCGGACUGCCAUGGCGA------------ACAUAUAAUGGCUGCCAAAGGUUAAAUGUGAAAUAGAAUUCACACAC- .......(-(((..((.((..((.((((((((((.((((....)))).))))...------------))).))).))..))))...))))...((((((......))))))...- ( -23.30) >DroAna_CAF1 16296 92 - 1 AAAACGGA-AACGAGGUCAAUCGAUAUUGUCCAUUU-----GGUGGCCACCA---------------GUUGGUAAUGGCUGCCAAAGGUUAAAUGCG-AAUAGAAUUCGCUCAA- ....((..-..)).((.((((....)))).)).(((-----((..((((((.---------------...)))...)))..)))))........(((-(((...))))))....- ( -30.30) >DroPer_CAF1 24079 93 - 1 AAAACGGA-AACGGGGUCAAUCGAUAUUGUCCAUUU-----GGUGGCCGCCA---------------GUUGGUAAUGGCUGCCAAAGGUUAAAUGCGGAAUAGAACUCGCAUAC- ....((..-..)).((.((((....)))).)).(((-----((..((((((.---------------...)))...)))..)))))......((((((........))))))..- ( -31.30) >consensus AAAACGGA_AACGGGGUCAAUCGAUAUUGUCCAUUU_____GGUGGCCACCA_______________GUUGGUAAUGGCUGCCAAAGGUUAAAUGCG_AAUAGAAUUCGCACAC_ ..............((.((((....)))).)).........((((((((((...................)))...)))))))................................ (-13.82 = -13.33 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:55 2006