Locus 6611

Sequence ID 3L_DroMel_CAF1
Location 17,572,007 – 17,572,098
Length 91
Max. P 0.500000
window10759

overview

Window 9

Location 17,572,007 – 17,572,098
Length 91
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 93.98
Mean single sequence MFE -16.89
Consensus MFE -14.71
Energy contribution -14.71
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.28
Structure conservation index 0.87
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17572007 91 + 23771897
-AAAAUCUAACAAAGCAAACUUGUUCAAUAGUCAUAUGCGUAUCAGGAAGUCAACAUUUCAAGGAUUGACUCAUUGAAAAAGUCGAAU------------GCGA
-.............(((.((((.(((((((((((.......(((..(((((....)))))...)))))))).)))))).))))....)------------)).. ( -17.51)
>DroVir_CAF1 6911 89 + 1
--AAAUCUAACAAAGCAAACUUGUUCAAUAGUCAUAUGCGUAUCAGGAAGUCAACAUUUCAAGGAUUGACUCAUUGAA-AAGUCGAAU------------GCGA
--............(((.((((.(((((((((((.......(((..(((((....)))))...)))))))).))))))-))))....)------------)).. ( -16.31)
>DroWil_CAF1 15712 92 + 1
AAAAAUCUAACAAAGCAAACUUGUUCAAUAGUCAUAUGCGUAUCAGGAAGUCAACAUUUCAAGGAUUGACUCAUUGAAAAAGUCGAAU------------GCGA
..............(((.((((.(((((((((((.......(((..(((((....)))))...)))))))).)))))).))))....)------------)).. ( -17.51)
>DroYak_CAF1 17899 91 + 1
-AAAAUCUAACAAAGCAAACUUGUUCAAUAGUCAUAUGCGUAUCAGGAAGUCAACAUUUCAAGGAUUGACUCAUUGAAAAAGUCGAAU------------ACGA
-.................((((.(((((((((((.......(((..(((((....)))))...)))))))).)))))).)))).....------------.... ( -14.71)
>DroMoj_CAF1 8339 89 + 1
--AAAUCUAACAAAGCAAACUUGUUCAAUAGUCAUAUGCGUAUCAGGAAGUCAACAUUUCAAGGAUUGACUCAUUGAA-AAGUCGAAU------------GCGA
--............(((.((((.(((((((((((.......(((..(((((....)))))...)))))))).))))))-))))....)------------)).. ( -16.31)
>DroAna_CAF1 8023 103 + 1
-AAAAUCUAACAAAGCAAACUUGUUCAAUAGUCAUAUGCGUAUCAGGAAGUCAACAUUUCAAGGAUUGACUCAUUGAAAAAGUCGAAUGCGAAUGCGAAUGCGA
-.............(((.((((.(((((((((((.......(((..(((((....)))))...)))))))).)))))).))))....(((....)))..))).. ( -19.01)
>consensus
_AAAAUCUAACAAAGCAAACUUGUUCAAUAGUCAUAUGCGUAUCAGGAAGUCAACAUUUCAAGGAUUGACUCAUUGAAAAAGUCGAAU____________GCGA
..................((((.(((((((((((.......(((..(((((....)))))...)))))))).)))))).))))..................... (-14.71 = -14.71 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:37 2006