| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,559,035 – 17,559,139 |
| Length | 104 |
| Max. P | 0.846633 |
| Location | 17,559,035 – 17,559,139 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 95.62 |
| Mean single sequence MFE | -34.36 |
| Consensus MFE | -31.89 |
| Energy contribution | -32.67 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.846633 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17559035 104 - 23771897 CUCCGGCUGACAUUUUCUGUUCUACGACUGCGAGCGCAAGUAUGUAGCGUUUUAGCCACUA---CUCAUGGCUCAUGGCUCCACAGCUCAUGGCUCAUGGCUAAAGC ....((((((.............(((.(((((.((....)).)))))))).))))))....---.(((((((.(((((((....))).)))))).)))))....... ( -32.24) >DroSec_CAF1 44607 104 - 1 CUCCGGCUGACAUUUUCUGUUCUACGACUGCGAG--CAAGUAUGCAGCGUUUUAGCCACUACAGCUCAUGGCUCAUGGCU-CACAGCUCAUGGCUCAUGGCUAAAGC .....((((.(((....(((((.........)))--))...)))))))((((((((((....(((.(((((((.......-...))).)))))))..)))))))))) ( -33.20) >DroSim_CAF1 48102 106 - 1 CUCCGGCUGACAUUUUCUGUUCUACGACUGCGAGCGCAAGUAUGCAGCGUUUUAGCCACUACAGCUCAUGGCUCAUGGCU-CACAGCUCAUGGCUCAUGGCUAAAGC ....((((((.............(((.(((((.((....)).)))))))).)))))).....(((.((((((.((((((.-....)).)))))).)))))))..... ( -37.64) >consensus CUCCGGCUGACAUUUUCUGUUCUACGACUGCGAGCGCAAGUAUGCAGCGUUUUAGCCACUACAGCUCAUGGCUCAUGGCU_CACAGCUCAUGGCUCAUGGCUAAAGC ....((((((.............(((.(((((.((....)).)))))))).)))))).....(((.((((((.(((((((....))).)))))).)))))))..... (-31.89 = -32.67 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:32 2006