Locus 6596

Sequence ID 3L_DroMel_CAF1
Location 17,513,809 – 17,513,908
Length 99
Max. P 0.969049
window10740

overview

Window 0

Location 17,513,809 – 17,513,908
Length 99
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 78.39
Mean single sequence MFE -40.00
Consensus MFE -22.10
Energy contribution -24.30
Covariance contribution 2.20
Combinations/Pair 1.23
Mean z-score -2.70
Structure conservation index 0.55
SVM decision value 1.64
SVM RNA-class probability 0.969049
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17513809 99 + 23771897
-GUCAUUCAUGCGGCCCCAACCGGAAGCGAUAGCCGGAACAUAAUCGUAGCUGUUCCGGCUCGAUGAGAGUCCUGGCAACCGGAUGGGUCGUAUGGAAUC
-....((((((((((((...((((..((...((((((((((..........)))))))))).(((....)))...))..))))..))))))))))))... ( -48.10)
>DroPse_CAF1 1 100 + 1
CAUCGCUCAUGCGACCCCAUCCAGAGGUCGUCGCCGGGACGUAGUCGUAGCUGGCAUGACUCGAGGCCAUUCCUGGCAGCCUGAUGACUUCUAUGGAUCU
..((((....))))..((((..(((((((((((((((.(((....)))..))))).......(..((((....))))..)..)))))))))))))).... ( -39.50)
>DroSec_CAF1 1 99 + 1
-GUCAUUCAUGCGGCCCCAACCGGAAGCGAUUGCCGGAACAUAGUCGUAGCUGUUCCGGCUCGAUGAGAUUCCUGGCAACCGGAUGGGUCGUAUGGAAUC
-....((((((((((((...((((......(((((((((....((((.(((((...)))))))))....)))).)))))))))..))))))))))))... ( -45.30)
>DroEre_CAF1 1 99 + 1
-GUCAUUCAUGCGGCCCCAGCCGGAAGUGAUAGCCGGAACAUAAUCGUAGCUGUUUCGGCUCGAUGAGAUUCCUGGCAACCGGAUGGGUCUUAUGGAAUC
-....((((((.(((((...((((.(....).(((((((....((((.(((((...)))))))))....)))).)))..))))..))))).))))))... ( -38.40)
>DroYak_CAF1 1 99 + 1
-GUCAUUCAUGCGGCCCCAACCGGAAGCGAUGGCCGGAACAUAAUCGUAGCUGUUUCGGCUCGCUGAGAUUCCAGGCAACCGGAUGGGUCUUAUGGAAUC
-....((((((.(((((...((((..((...((((((((((..........))))))))))..(((......)))))..))))..))))).))))))... ( -38.40)
>DroAna_CAF1 1 99 + 1
-AUCGUUUGUGCGACCCCAACCGGAGGUCGUAGCUGGAAUAUAGUCAUAGCUGGUUUUUGUGGAAGCUAGUCCCGGCAACCUUAUGGAAUUUAUGGAGCU
-...((((.(((((((((....)).)))))))(((((..(((....)))(((((((((....))))))))).)))))..((....))........)))). ( -30.30)
>consensus
_GUCAUUCAUGCGGCCCCAACCGGAAGCGAUAGCCGGAACAUAAUCGUAGCUGUUUCGGCUCGAUGAGAUUCCUGGCAACCGGAUGGGUCUUAUGGAAUC
.....((((((.(((((...((((........(((((((....((((.((((.....))))))))....)))).)))..))))..))))).))))))... (-22.10 = -24.30 +   2.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:19 2006