Locus 6569

Sequence ID 3L_DroMel_CAF1
Location 17,384,536 – 17,384,656
Length 120
Max. P 0.940051
window10695

overview

Window 5

Location 17,384,536 – 17,384,656
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.91
Mean single sequence MFE -33.31
Consensus MFE -28.74
Energy contribution -28.74
Covariance contribution 0.00
Combinations/Pair 1.08
Mean z-score -1.65
Structure conservation index 0.86
SVM decision value 1.28
SVM RNA-class probability 0.940051
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17384536 120 - 23771897
GCUCGUCCACUCCUCCGCUUUCCGGACUUACCGCCAAUUUCCCGAAGGGGAAGCCAUCAACUUUAUGCUUCGUGACUGAGUCAUCAGGUUUUUUACUCCAUCUCCCUCCGGUUUUGGCCC
....((((...............)))).....(((((....(((.(((((((((............)))))....((((....))))................)))).)))..))))).. ( -30.36)
>DroSec_CAF1 11302 120 - 1
GCUCGCCCACUCCCCCGCUAUCCGGACUUUCCGCCAAUUUCCCGAGGGGGAAGCCAUCAACUUUGUGCUUCGUGACUGAGUCAUCAGGUUUUUUACUCCAUCUCCCUCCGGUUUUGGCCC
..............(((.....))).......(((((...((.(((((((((((((.......)).)))))....((((....))))...............)))))).))..))))).. ( -33.90)
>DroSim_CAF1 11229 120 - 1
GCUCGCCCACUCCCCCGCUAUCCGGACUUUCCGCCAAUUUCCCGAAGGGGAAGCCAUCAACUUUGUGCUUCGUGACUGAGUCAUCAGGUUUUUUACUCCAUCUCCCUCCGGUUUUGGCCC
..............(((.....))).......(((((....(((.(((((((((((.......)).)))))....((((....))))................)))).)))..))))).. ( -31.30)
>DroEre_CAF1 11496 118 - 1
GCUCGCCCACUG--CCGCUAUCCGGACUUUCCGGCAAUUUCCCGAGGGGGAAGCCAUCAACUUUGCGCUUCGUGACUGAGUCAUCAGGUUUUUUCCUCCAUCUCCCUCCGGUUUUGGCCU
....(((....(--(((....((((.....)))).........(((((((((((((.......)).)))))....((((....))))...............))))))))))...))).. ( -36.10)
>DroYak_CAF1 13808 118 - 1
GCUCGCCCACUC--CCGCUAUACGGACUUUCCGCCAGUUUCCCGAGGGGGAAGCCAUCAACUUUGUGCUUCGUGACUGAGUCAUCAGGUUUUUUUCACCAUCUCCCUCCGGUUUUGGCCU
............--(((.....))).......(((((...((.(((((((((((((.......)).)))))((((((((....)))).......))))....)))))).))..))))).. ( -34.91)
>consensus
GCUCGCCCACUCC_CCGCUAUCCGGACUUUCCGCCAAUUUCCCGAGGGGGAAGCCAUCAACUUUGUGCUUCGUGACUGAGUCAUCAGGUUUUUUACUCCAUCUCCCUCCGGUUUUGGCCC
..............(((.....))).......(((((....(((.(((((((((((.......)).)))))....((((....))))................)))).)))..))))).. (-28.74 = -28.74 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:36 2006