| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,372,820 – 17,372,930 |
| Length | 110 |
| Max. P | 0.578055 |
| Location | 17,372,820 – 17,372,930 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 88.48 |
| Mean single sequence MFE | -30.43 |
| Consensus MFE | -22.54 |
| Energy contribution | -24.43 |
| Covariance contribution | 1.89 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.578055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17372820 110 + 23771897 UG-AUUAAUUUGUGUUAUUAAAUUAGCUGAACGCACUUGGGACGACAUGUUUGUGUGUGUAUGUGUGCAGCUAGUUAAGGCCAAUUAGCAUCUGUUCGACGCAAUUCAUAU ((-(.....(((((((....(((((((((..(((((...(.((.((((....)))))).)..))))))))))))))...((......))........))))))).)))... ( -27.90) >DroSec_CAF1 55796 108 + 1 UG-AUUAAUUUGUGUUAUUAAAUUAGCUGCACGCACUUGGUACGAUGUGUUUGUGUGUG--UGUGUGCAGCUAAUUAAGGCCAAUUAGCAUCUGUUCGACGCAAUUCAUAC ((-(.....(((((((....((((((((((((((((....(((((.....)))))...)--)))))))))))))))...((......))........))))))).)))... ( -36.60) >DroYak_CAF1 61615 107 + 1 UGUAUUAAUUCGUGUUAUCAAAUUAGCUGCACGCACUUCGGUCGAUGUGUUAGUUUGU----GUGUGAAGCUAAUUAAGGCCAAUUAGCAGCUGUUCGACGCAAUUCAUAU .((((.((((.(((((..(((((((((.(((((.((....)))).)))))))))))).----.......(((((((......)))))))........))))))))).)))) ( -26.80) >consensus UG_AUUAAUUUGUGUUAUUAAAUUAGCUGCACGCACUUGGGACGAUGUGUUUGUGUGUG__UGUGUGCAGCUAAUUAAGGCCAAUUAGCAUCUGUUCGACGCAAUUCAUAU .........(((((((....(((((((((((((((....((((((.....)))))).....)))))))))))))))...((......))........)))))))....... (-22.54 = -24.43 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:22 2006