Locus 6522

Sequence ID 3L_DroMel_CAF1
Location 17,273,250 – 17,273,352
Length 102
Max. P 0.611362
window10571

overview

Window 1

Location 17,273,250 – 17,273,352
Length 102
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.92
Mean single sequence MFE -36.03
Consensus MFE -23.49
Energy contribution -23.69
Covariance contribution 0.20
Combinations/Pair 1.08
Mean z-score -2.65
Structure conservation index 0.65
SVM decision value 0.16
SVM RNA-class probability 0.611362
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17273250 102 - 23771897
UCUGAGCCAAUUUCUAUGG------------------CAGUGGCGGGGCAAUACGUAUGGCUGCUGCCAGAAUGCAAUGCAUAAAUUUAUGGCAUCCCAAUGCAGAGCAGGCAAUUAAGA
.....(((........(((------------------(((..((.(.((.....)).).))..))))))...(((..(((((.......(((....))))))))..))))))........ ( -33.91)
>DroSec_CAF1 156751 102 - 1
UGUGAGCCAAUUUCUAUGG------------------CAGUGGCGGGGCAAUACGUUUGGCUGCUGCCAGAAUGCAAUGCAUAAAUUUAUGGCAUCCCAAUGCAGAGCAGGCAAUUAAGA
.....(((........(((------------------(((..((.((((.....)))).))..))))))...(((..(((((.......(((....))))))))..))))))........ ( -36.61)
>DroSim_CAF1 151820 102 - 1
UGUGAGCCAAUUUCUAUGG------------------CAGUGGCGGGGCAAUACGUUUGGCUGCUGCCAGAAUGCAAUGCAUAAAUUUAUGGCAUCCCAAUGCAGAGCAGGCAAUUAAGA
.....(((........(((------------------(((..((.((((.....)))).))..))))))...(((..(((((.......(((....))))))))..))))))........ ( -36.61)
>DroEre_CAF1 159617 102 - 1
UCUGAGCCAAUUUCUAUGG------------------CGGUGGCGGAGCCAUACGUAUUGCUGCUGCCAAAAUGCAAUGCAUAAAUUUAUGGCAUCCCAAUGCAGAGCUGCCAAUUAAGA
.....((((.......)))------------------)((..(((((((((((.((..(((...(((......)))..)))...)).)))))).)))(......).))..))........ ( -30.10)
>DroYak_CAF1 164480 120 - 1
UCUGAGCCAAUUUCUAUGGCAGUGGCAGUGGCGGUGGCGGUGGCGGUGCAAUACGUAUUGCUGCUGCCAGAAUGCAAUGCAUAAAUUUAUGGCAUCCCAAUGCAGAGCUGGCAAUUAAGA
.....((((.......))))..((.((((.(((.((((((..(((((((.....)))))))..))))))...)))..(((((.......(((....))))))))..)))).))....... ( -42.91)
>consensus
UCUGAGCCAAUUUCUAUGG__________________CAGUGGCGGGGCAAUACGUAUGGCUGCUGCCAGAAUGCAAUGCAUAAAUUUAUGGCAUCCCAAUGCAGAGCAGGCAAUUAAGA
.....(((........(((..................(((..((.((((.....)))).))..))))))....((..(((((.......(((....))))))))..)).)))........ (-23.49 = -23.69 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:38 2006