Locus 6487

Sequence ID 3L_DroMel_CAF1
Location 17,255,041 – 17,255,161
Length 120
Max. P 0.659177
window10465

overview

Window 5

Location 17,255,041 – 17,255,161
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.03
Mean single sequence MFE -30.54
Consensus MFE -26.40
Energy contribution -27.00
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.36
Structure conservation index 0.86
SVM decision value 0.26
SVM RNA-class probability 0.659177
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17255041 120 + 23771897
AAGGCCGGCCCAAAUGAAUAUGUAAGCGGUCCCACUUGGCCAUUUACGUGUACAAUUGAUGUGGUUUGAUUUCGUUAGGGGCAUUGCCAACUACAUACUACAUAAACACAAUAACAAGCA
..(((..((((.((((((((((((((.((((......)))).)))))))))..(((..(......)..))))))))..))))...)))................................ ( -29.80)
>DroSec_CAF1 138800 113 + 1
GAGGCCGCCCCAAAUGAAUAUGUAAGCGGUCCCACUUGGCCAUUUACGUGUACAAUUGAUGUGGUUUGAUUUCGUUAGGGGCAUUGCCAACUA-------CAUAAACACAAUAACAAGCA
..(((.(((((.((((((((((((((.((((......)))).)))))))))..(((..(......)..)))))))).)))))...))).....-------.................... ( -32.90)
>DroSim_CAF1 133650 113 + 1
GAGGCCGGCCCAAAUGAAUAUGUAAGCGGUCCCACUUGGCCAUUUACGUGUACAAUUGAUGUGGUUUGAUUUCGUUAGGGGCAUUGCCAACUA-------CAUAAACACAAUAACAAGCA
..(((..((((.((((((((((((((.((((......)))).)))))))))..(((..(......)..))))))))..))))...))).....-------.................... ( -29.80)
>DroEre_CAF1 141957 113 + 1
GAGGACGGCCCAAAUGAAUAUGUAAGCGGUCCCACUUGGCCGUUUACGUGUACAAUUGAUGUGGUUUGAUUUCGUUAGGGGCAUUGCCAACUA-------CAUAAACACAAUAACAAGCA
..((...((((.(((((((((((((((((((......))))))))))))))..(((..(......)..))))))))..))))....)).....-------.................... ( -33.10)
>DroYak_CAF1 145826 113 + 1
GAGGACGGCCCAAAUGAAUAUGUAAGCGGUCCCACUUGGCCAUUUACGUGUACAAUUGAUGUGGUUUGAUUUCGUUAGGGGCAUUGCCAACUA-------CAUAAACACAAUAACAAGCA
..((...((((.((((((((((((((.((((......)))).)))))))))..(((..(......)..))))))))..))))....)).....-------.................... ( -27.10)
>consensus
GAGGCCGGCCCAAAUGAAUAUGUAAGCGGUCCCACUUGGCCAUUUACGUGUACAAUUGAUGUGGUUUGAUUUCGUUAGGGGCAUUGCCAACUA_______CAUAAACACAAUAACAAGCA
..(((..((((.((((((((((((((.((((......)))).)))))))))..(((..(......)..))))))))..))))...)))................................ (-26.40 = -27.00 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:55 2006