Locus 647

Sequence ID 3L_DroMel_CAF1
Location 1,918,990 – 1,919,099
Length 109
Max. P 0.703468
window989

overview

Window 9

Location 1,918,990 – 1,919,099
Length 109
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.23
Mean single sequence MFE -32.33
Consensus MFE -17.63
Energy contribution -17.22
Covariance contribution -0.41
Combinations/Pair 1.50
Mean z-score -1.68
Structure conservation index 0.55
SVM decision value 0.36
SVM RNA-class probability 0.703468
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1918990 109 - 23771897
AGACUCCU-----------UCUCCUUCAGAUGUGCUUCUACACGGCUGUGGCAGUCCUGGCACCGGCAAUUGCUCUGUCUAAGGCCACGGGACUGGACACCAAAAUCGCCGUGGUCCUGA
.(((....-----------........(((......))).((((((..(((((((((((((...((((.......))))....)))..)))))))....))).....))))))))).... ( -33.30)
>DroPse_CAF1 48696 106 - 1
AUCUUCCU-----------CUA---UUAGAUGUGCUUCUACACGGCUGUUGCUGUCCUCGCUCCAGCCAUUGCCUUGUCCAAGGCCACAGGAUUGGACACCAAAAUUGCUGUCAUUCUGA
((((....-----------...---..))))(((......)))(((((..((.......))..)))))...(((((....)))))..((((((..((((.((....)).)))))))))). ( -28.50)
>DroWil_CAF1 63296 117 - 1
GGAUUUCUUUUUUUUUUUUCUU---UCAGAUGUGCUUCUAUACGGCAGUGGCUGUUUUAGCUCCAGCCAUUGCCUUGUCCAAGGCCACUGGAUUGGAUACAAAAAUCGCCGUUGUCUUGA
((((..(....(((((..((((---((((.((.((((..(((.(((((((((((.........))))))))))).)))...)))))))))))..)))...))))).....)..))))... ( -32.70)
>DroMoj_CAF1 52097 116 - 1
CCAUUCCCUGUCUCUUGCUCU----GCAGAUGUGCUUCUACACGGCCGUGGCCGUCCUAGCUCCGGCCAUUGCUCUGUCCAAGGCAACUGGCUUGGACACCAAAAUCGCAGUUAUUCUUA
..............((((...----((((..(((......)))(((((..((.......))..))))).))))..((((((((.(....).))))))))........))))......... ( -36.20)
>DroAna_CAF1 45343 107 - 1
AGUCUUCU-----------CGUC--UCAGAUGUGCUUCUAUACGGCUGUGGCCGUCCUGGCUCCUGCCAUCGCUCUUUCGAAGGCAACAGGCCUGGACACCAAAAUAGCCGUUGUCCUGA
........-----------....--((((....((......((((((((((..((((.((((..((((.(((......))).))))...)))).)))).)))...))))))).)).)))) ( -34.80)
>DroPer_CAF1 47929 106 - 1
AUCUUCCU-----------CUA---UUAGAUGUGCUUCUACACGGCUGUUGCUGUCCUCGCUCCAGCCAUUGCCUUGUCCAAGGCCACAGGAUUGGACACCAAAAUUGCUGUCAUUCUGA
((((....-----------...---..))))(((......)))(((((..((.......))..)))))...(((((....)))))..((((((..((((.((....)).)))))))))). ( -28.50)
>consensus
AGAUUCCU___________CUU___UCAGAUGUGCUUCUACACGGCUGUGGCUGUCCUAGCUCCAGCCAUUGCCCUGUCCAAGGCCACAGGAUUGGACACCAAAAUCGCCGUUAUCCUGA
...............................(((......)))(((((..((.......))..)))))...(((........)))..((((((..(((............))))))))). (-17.63 = -17.22 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:32 2006