Locus 6468

Sequence ID 3L_DroMel_CAF1
Location 17,240,444 – 17,240,564
Length 120
Max. P 0.562093
window10420

overview

Window 0

Location 17,240,444 – 17,240,564
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.00
Mean single sequence MFE -32.22
Consensus MFE -32.44
Energy contribution -32.04
Covariance contribution -0.40
Combinations/Pair 1.07
Mean z-score -1.09
Structure conservation index 1.01
SVM decision value 0.06
SVM RNA-class probability 0.562093
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17240444 120 - 23771897
GCAAUCCCCAGCUGUCCGUGGGAUAGCCAGGAUUAACAGUUCUGCGAAAUGAAAUGGAUAGGACGUAAAAACGUUAUGCCGGCCAAAAGGCACACAACAGUUUAAGCACUCGCAUUGCCA
..(((((...(((((((...)))))))..)))))....((..(((((.......(((....(((((....)))))...)))(((....)))..................)))))..)).. ( -33.20)
>DroSec_CAF1 124365 120 - 1
GCAAUCCCCAGCUGUCCGUGGGAUAGCCAGGAUUAACAGUUCUGCGAAAUGAAAUGGAUAGGACGUAAAAACGUUAUGCCGGCCAAAAGGCAUACAACAGUAUAAGCACUCGCAUUGCCA
..(((((...(((((((...)))))))..)))))....((..(((((.......(((....(((((....)))))...)))(((....)))((((....))))......)))))..)).. ( -33.80)
>DroSim_CAF1 118273 120 - 1
GCAAUCCCCAGCUGUCCGUGGGAUAGCCAGGAUUAACAGUUCUGCGAAAUGAAAUGGAUAGGACGUAAAAACGUUAUGCCGGCCAAAAGGCAUACAACAGUUUAAGCACUCGCAUUGCCA
..(((((...(((((((...)))))))..)))))....((..(((((..((...(((((.((((((....)))))(((((........)))))....).)))))..)).)))))..)).. ( -33.20)
>DroEre_CAF1 127526 120 - 1
GCAAUCCCCAGCUGUCCGUGGGAUAGUCAGGAUUAACAGUUCUGCGAAAUGAAAUGGAUAGGACGUAAAAACGUUAUGCCGGCCAAAAGGCAUACAACAGUUUAAGCACUUGCACUGCCA
..(((((...(((((((...)))))))..)))))....((..(((((..((...(((((.((((((....)))))(((((........)))))....).)))))..)).)))))..)).. ( -29.50)
>DroYak_CAF1 130911 120 - 1
GCAAUCCCCAGCUGUCCGUGGGAUAGCCAGGAUUAACAGUUCUGCGAAAUGAAAUGGAUAGGACGUAAAAACGUUAUGCCGGCCAAAAGGCAUACAACAGUUUAAGCACUUGCACUGCCA
(((((((((((((((((...)))))))((((((.....))))))..........)))...))).((..((((((((((((........))))))..)).))))..))..))))....... ( -31.40)
>consensus
GCAAUCCCCAGCUGUCCGUGGGAUAGCCAGGAUUAACAGUUCUGCGAAAUGAAAUGGAUAGGACGUAAAAACGUUAUGCCGGCCAAAAGGCAUACAACAGUUUAAGCACUCGCAUUGCCA
..(((((...(((((((...)))))))..)))))....((..(((((.......(((....(((((....)))))...)))(((....)))..................)))))..)).. (-32.44 = -32.04 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:12 2006