Locus 642

Sequence ID 3L_DroMel_CAF1
Location 1,897,115 – 1,897,222
Length 107
Max. P 0.671902
window983

overview

Window 3

Location 1,897,115 – 1,897,222
Length 107
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 76.66
Mean single sequence MFE -26.10
Consensus MFE -8.66
Energy contribution -9.50
Covariance contribution 0.84
Combinations/Pair 1.29
Mean z-score -1.88
Structure conservation index 0.33
SVM decision value 0.29
SVM RNA-class probability 0.671902
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1897115 107 - 23771897
UCUGAUUAUGUGUCGGGCCUUGCUAUGUUAAGCAGAGAAACU------AGUUUCUGUUGGCUACCUGUAGAUACUGUUAAGUAAAUGUUAUUUGGCUUAACAUAAGUUUAAGC-
.(((((.....)))))((...((((((((((((........(------(((.((((..((...))..)))).)))).((((((.....))))))))))))))).)))....))- ( -24.70)
>DroSec_CAF1 19556 106 - 1
UCUGAUUAUGUGGCGAGCAGUGCUAUGUUAUGCCGAGAAACU------AGCUUCUGUUGGCUACCUGUAGAUACUGUU-ACUAAAUGUUAUUUGGUUUAACAUAAGUUUCAGC-
((((.....(((((.(((((.((((.(((.........))))------)))..))))).)))))...))))..(((..-(((..((((((.......)))))).)))..))).- ( -28.80)
>DroSim_CAF1 19817 107 - 1
UCUGAUUAUGUGGCGAGCAGUGCUAUGUUAUGCCGAGAAACU------AGUUUCUGUUGGCUACCUGUAGAUACUGUUAACUAAAUGUUAUUUGGUUUAACAUAAGUUUAAGC-
.....((((((....(((((((((((.....(((((((((..------..)))))..)))).....)))).)))))))((((((((...))))))))..))))))........- ( -25.40)
>DroEre_CAF1 20816 112 - 1
UCUGAUUAUGUGGCGAGCAGUGCUAUGU-UAGCAGCAACAAUAAUUGCAGUUUCUGCUGGAAACUUGUAGAUACUGUCAAAUAAAUGUUAUUUGGCUUAACAUAAGAUUAAAU-
..(((((.((((..((((..(((((...-)))))............(((((.(((((.(....)..))))).)))))((((((.....))))))))))..)))).)))))...- ( -30.70)
>DroYak_CAF1 20189 91 - 1
UCUGAUUAUGU----------------U-AAGCAGAGAAACU------AGUUUCUGUUGGAAAGUUGUAGAUACAUUCAAGAAAGAUGUAUUUGGUCUAACAUAGGUUGAAAUA
((...((((((----------------(-(((((((((....------..)))))))).........((((((((((.......))))))))))...))))))))...)).... ( -20.90)
>consensus
UCUGAUUAUGUGGCGAGCAGUGCUAUGUUAAGCAGAGAAACU______AGUUUCUGUUGGCUACCUGUAGAUACUGUUAACUAAAUGUUAUUUGGUUUAACAUAAGUUUAAGC_
.....((((((...((((............((((((((............)))))))).........((((((.((((.....)))).)))))))))).))))))......... ( -8.66 =  -9.50 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:26 2006