Locus 6412

Sequence ID 3L_DroMel_CAF1
Location 17,179,712 – 17,179,803
Length 91
Max. P 0.500000
window10269

overview

Window 9

Location 17,179,712 – 17,179,803
Length 91
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 86.08
Mean single sequence MFE -26.03
Consensus MFE -15.81
Energy contribution -15.90
Covariance contribution 0.09
Combinations/Pair 1.14
Mean z-score -3.57
Structure conservation index 0.61
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17179712 91 - 23771897
GGCUCUUUUUGUCGGCUCGGGAAGUCAUAAGUCGCAAGUUCUGAGCUG-G--CGAAUAAGAG--AAC---AAAAAAAUAGAAAAAAGGAAACUGAAAAU
..((((((((((((((((((((.((........))...))))))))))-)--)))).)))))--...---...............((....))...... ( -28.30)
>DroSec_CAF1 64310 91 - 1
GGCUCUUUUUGUCGGCUCGGGAAGUCAUAAGUCGCAAGUUCUGAGCUG-G--CGAAUAAGAG--AAC---AAAAAAAUGGGGAAAAAAGACCUGAAAAU
..((((((((((((((((((((.((........))...))))))))))-)--)))).)))))--...---.......(.(((........))).).... ( -27.80)
>DroSim_CAF1 56645 91 - 1
GGCUCUUUUUGUCGGCUCGGGAAGUCAUAAGUCGCAAGUUCUGAGCUG-G--CGAAUAAGAG--AAC---AAAAAAAUGGGGAAAAAAGACCUGAAAAU
..((((((((((((((((((((.((........))...))))))))))-)--)))).)))))--...---.......(.(((........))).).... ( -27.80)
>DroEre_CAF1 66260 90 - 1
AGCUCUUUUUGUCGGCUCGGGAAGUCAUAAGUCGCAAGUUCUGAGCUG-G--CGAAUGAGCG--AAC---AAAAAAAUAAC-AAAAGGAACCUGAAAAU
.((((..(((((((((((((((.((........))...))))))))))-)--)))).)))).--...---...........-................. ( -27.80)
>DroYak_CAF1 67480 93 - 1
GGCUCUUUUUGUCGGCUCGGGAAGUCAUAAGUCGCAAGUUCUGAGCUGGG--CGAAUAAGAG--UACGUAAAAAAAAUCAC-AAAAA-AAACUGAAAAU
.(((((((((((((((((((((.((........))...))))))))).))--)))).)))))--)................-.....-........... ( -23.90)
>DroAna_CAF1 46225 93 - 1
GGGGCUUUUUGUCGGCUCGGGAAGUCAUAAGUCGCAAGUUCUGAGCUG-CAACAAAAAGGAAAAAAU---AAAAAAAUGAA-AAGAA-ACAGUGAAAAU
....((((((((((((((((((.((........))...))))))))))-..))))))))........---...........-.....-........... ( -20.60)
>consensus
GGCUCUUUUUGUCGGCUCGGGAAGUCAUAAGUCGCAAGUUCUGAGCUG_G__CGAAUAAGAG__AAC___AAAAAAAUGAA_AAAAA_AAACUGAAAAU
..(((((((((.((((((((((.((........))...))))))))))....)))).)))))..................................... (-15.81 = -15.90 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:47 2006