| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,157,393 – 17,157,488 |
| Length | 95 |
| Max. P | 0.624624 |
| Location | 17,157,393 – 17,157,488 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 80.17 |
| Mean single sequence MFE | -17.18 |
| Consensus MFE | -13.07 |
| Energy contribution | -13.40 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.624624 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17157393 95 + 23771897 ---GUGGCAAUUUAUGCGGCUCAGUGUUGCAUUAAAUGUACAGUGAAAUGCUUGAGUUAAUAAAAAAAAAA---GGAAAA--------------CAUGAAAUGUAUGAACGCCUG ---..(((((((((.(((..(((.(((.((((...))))))).)))..))).)))))).............---......--------------((((.....))))...))).. ( -19.70) >DroSim_CAF1 33716 94 + 1 ---GUGGCAAUUUAUGCGGCUCAGUGUUGCAUUAAAUGUACAGUGAAAUGCUUGAGUUAAUAAAAA-AAAA---GGAAAA--------------CAUGGAAUGUAAAAACGCCUG ---..(((((((((.(((..(((.(((.((((...))))))).)))..))).))))))........-....---.....(--------------(((...))))......))).. ( -18.90) >DroEre_CAF1 42709 96 + 1 ---GUGGCAAUUUAUGCGGCUCAGUGUUGCAUUAAAUGUACAGUGAAAUGCUUGAGUUAAUAAAAA-AAAAACCAAAAAA--------------CAAGAAAUGAAA-AAAGCCUG ---..(((((((((.(((..(((.(((.((((...))))))).)))..))).))))))........-.............--------------((.....))...-...))).. ( -17.50) >DroWil_CAF1 52905 94 + 1 CUUGUGGCAAUUUAUGCGGCUCAGUGUUGCAUUAAAUGUACAGUGAAAUGCUUGAGUUAAUAAAAA-ACAG---AGAAAAA-------------UUUA-A---CAAAAAUCCAAG ..((((.((.((.(((((((.....))))))).)).))))))((.((((.(((..(((.......)-)).)---))....)-------------))).-)---)........... ( -14.20) >DroYak_CAF1 44431 94 + 1 ---GUGGCAAUUUAUGCGGCUCAGUGUUGCAUUAAAUGUACAGUGAAAUGCUUGAGUUAAUAAAAC-AAGA---AAAAAA--------------CAAGAAAUGUAAAAACGCCUG ---..(((((((((.(((..(((.(((.((((...))))))).)))..))).))))))........-....---.....(--------------((.....)))......))).. ( -18.70) >DroAna_CAF1 23932 107 + 1 ---GUGGCAAUUUAUGCGGCUCAGUGUUGCAUUAAAUGUACAGUGAAAUGCUCGACUUAAUAAAAA-AAGA---GAAAAAAUAUAUACAAAAAACAAGGCAGGACU-UUAACGGG ---((.(((.....))).))..(((.((((......((((..........(((.............-..))---)..........)))).........)))).)))-........ ( -14.07) >consensus ___GUGGCAAUUUAUGCGGCUCAGUGUUGCAUUAAAUGUACAGUGAAAUGCUUGAGUUAAUAAAAA_AAAA___AAAAAA______________CAAGAAAUGUAAAAACGCCUG ........((((((.(((..(((.(((.((((...))))))).)))..))).))))))......................................................... (-13.07 = -13.40 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:33 2006