Locus 6393

Sequence ID 3L_DroMel_CAF1
Location 17,123,591 – 17,123,687
Length 96
Max. P 0.968615
window10238

overview

Window 8

Location 17,123,591 – 17,123,687
Length 96
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 91.15
Mean single sequence MFE -14.72
Consensus MFE -14.70
Energy contribution -14.70
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.83
Structure conservation index 1.00
SVM decision value 1.63
SVM RNA-class probability 0.968615
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17123591 96 + 23771897
UCAAACUUUUGCCAUUUGUGGCCAACAUAUUUUGAAGUUGGCCCGCACACACAGCAUUCUUGUUAGCCACCCACCAUUCCACUUCCAUUCUCCCCA
...(((...(((....((((((((((..........))))).)))))......))).....)))................................ ( -14.70)
>DroSec_CAF1 7879 96 + 1
UCAAACUUUUGCCAUUUGUGGCCAACAUAUUUUGAAGUUGGCCCGCACACACAGCAUUCUUGUUAGCCACCCACCAUUCCACUCCCAUUCUUCCCA
...(((...(((....((((((((((..........))))).)))))......))).....)))................................ ( -14.70)
>DroSim_CAF1 2210 96 + 1
UCAAACUUUUGCCAUUUGUGGCCAACAUAUUUUGAAGUUGGCCCGCACACACAGCAUUCUUGUUAGCCACCCACCAUUCCACUCCCAUUCUUCCCA
...(((...(((....((((((((((..........))))).)))))......))).....)))................................ ( -14.70)
>DroYak_CAF1 8255 82 + 1
UCAAACUUUUGCCAUUUGUGGCCAACAUAUUUUGAAGUUGGCCCGCACACACAGCAUUCUUGUUAGCCACCCACC--------------CGCCCCA
..........((.....(((((.((((......(((((((...........)))).))).)))).))))).....--------------.)).... ( -14.80)
>consensus
UCAAACUUUUGCCAUUUGUGGCCAACAUAUUUUGAAGUUGGCCCGCACACACAGCAUUCUUGUUAGCCACCCACCAUUCCACUCCCAUUCUCCCCA
...(((...(((....((((((((((..........))))).)))))......))).....)))................................ (-14.70 = -14.70 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:18 2006