Locus 639

Sequence ID 3L_DroMel_CAF1
Location 1,882,615 – 1,882,717
Length 102
Max. P 0.880622
window979

overview

Window 9

Location 1,882,615 – 1,882,717
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 90.27
Mean single sequence MFE -24.67
Consensus MFE -21.32
Energy contribution -21.20
Covariance contribution -0.12
Combinations/Pair 1.14
Mean z-score -1.57
Structure conservation index 0.86
SVM decision value 0.91
SVM RNA-class probability 0.880622
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1882615 102 + 23771897
GACUUUCAAACUGUUCAAAUGAGACAAUUUAAAUGGUCAGUAAUAUCAGUAAUAUUAGCUGGGAGGCUUAAGUGAAACAUUUGCCUGCUGGGAGGUCUGUUC
(((((((..((((((.((((......)))).))))))((((....(((((.......))))).((((..(((((...))))))))))))))))))))..... ( -24.50)
>DroSec_CAF1 5030 93 + 1
GACUUUCAAACUGUUUAAAUGAGACAAUUUAAAUGGUCAGU---------AAUAUUAGCUGGGAGGCCUAAGUGAAACAUUUGCCGGCUGGGAGGUCUGUGC
(((((((..(((((((((((......)))))))))))....---------.....(((((((.(((.............))).))))))))))))))..... ( -24.92)
>DroSim_CAF1 5164 93 + 1
GACUUUCAAACUGUUUAAAUGAGACAAUUUAAAUGGUCAGU---------AAUAUUAGCUGGGAGGCCUAAGUGAAACAUUUGCCGGCUGGGAGGUCUGUGC
(((((((..(((((((((((......)))))))))))....---------.....(((((((.(((.............))).))))))))))))))..... ( -24.92)
>DroEre_CAF1 5074 92 + 1
GACUUUCA-GCUGUUUAAAUGAGACAAUUUAAAUGGUAAGU---------AAGAUUAGCUGGGAGGCCUAAGUGAAACAUUUGUUGGCUGGGGGGCCUAUGC
.((((...-(((((((((((......)))))))))))))))---------.......((....((((((.(((..(((....))).)))...))))))..)) ( -24.90)
>DroYak_CAF1 5236 93 + 1
GACUUUCAAACUGUUUAAAUGAGACAAUUUAAAUGGUCAGU---------AAUAUUAGCUGGGAGGCUUAAGUGAAACAUUUGCUGGCUGGGAGGUCUAUGC
(((((((.....((((((((......))))))))(((((((---------((....((((....))))............))))))))).)))))))..... ( -24.09)
>consensus
GACUUUCAAACUGUUUAAAUGAGACAAUUUAAAUGGUCAGU_________AAUAUUAGCUGGGAGGCCUAAGUGAAACAUUUGCCGGCUGGGAGGUCUGUGC
(((((((..(((((((((((......)))))))))))..................(((((((.(((.............))).))))))))))))))..... (-21.32 = -21.20 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:22 2006