| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,105,669 – 17,105,760 |
| Length | 91 |
| Max. P | 0.819347 |
| Location | 17,105,669 – 17,105,760 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 80.55 |
| Mean single sequence MFE | -15.38 |
| Consensus MFE | -10.38 |
| Energy contribution | -10.61 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.819347 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17105669 91 - 23771897 AUGAUUUACUCCUGCUCAUACGCUCUCC--GCGC-AUUUCAAUUGCCAAUCAAUCGAUGGCCUCUGCCAUCA----------------UUCCAAACUCGCGCACACAAUA .............((......)).....--((((-......((((.....)))).((((((....)))))).----------------..........))))........ ( -17.60) >DroSec_CAF1 65111 91 - 1 AUGAUUUACUCCCGCCCAUACGCUCUGC--GCGC-AUUUCAAUUGCCAAUCAAUCGAUGGCCCCUUCCAUCA----------------UUCCAAACUCGCACACACAAUA .............((......))..(((--(.((-(.......))).........(((((......))))).----------------.........))))......... ( -12.10) >DroSim_CAF1 67116 91 - 1 AUGAUUUACUCCCGCCCAUACGCUCUGC--GCGC-AUUUCAAUUGCCAAUCAAUCGAUGGCCCCUGCCAUCA----------------UUCCAAACUCGCGCACACAAUA .............((......))..(((--((((-(.......))).........((((((....)))))).----------------..........)))))....... ( -20.50) >DroEre_CAF1 63979 91 - 1 AUGAUUUACUCCCGGUCGCACGCUCUCC--GCGC-AUUUCAAUUGCCAAUCAAUCGAUGGCCCCUGCCAUCA----------------UUCCAAACUCGCACACACAAUA .(((((......(((..(....)...))--).((-(.......))).)))))...((((((....)))))).----------------...................... ( -15.30) >DroYak_CAF1 66799 107 - 1 AUGAUUUACUCCCGGUCGCACGCUCUCC--GCGC-AUUUCAAUUGCCAAUCAAUCGAUGGCCCCUGCCAUCAUUCCAUCAUUUCAUCAUUCCAAACUCGCACACACAAUA .(((((......(((..(....)...))--).((-(.......))).)))))...((((((....))))))....................................... ( -15.30) >DroAna_CAF1 65380 80 - 1 AUGAUUUACUCCCAGCCAUACGCUCUAUAUGCGCAAUUUCAAUUGGCAAUCAAUCGGUGGCCCGCUUCCUC------------------------------CGUACAAUA ..............((((..(((.......)))..........)))).......(((.((.......)).)------------------------------))....... ( -11.50) >consensus AUGAUUUACUCCCGCCCAUACGCUCUCC__GCGC_AUUUCAAUUGCCAAUCAAUCGAUGGCCCCUGCCAUCA________________UUCCAAACUCGCACACACAAUA .(((((..............(((.......)))..............)))))...((((((....))))))....................................... (-10.38 = -10.61 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:11 2006