Locus 6387

Sequence ID 3L_DroMel_CAF1
Location 17,096,048 – 17,096,153
Length 105
Max. P 0.722087
window10228

overview

Window 8

Location 17,096,048 – 17,096,153
Length 105
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 87.23
Mean single sequence MFE -22.98
Consensus MFE -18.81
Energy contribution -19.60
Covariance contribution 0.79
Combinations/Pair 1.06
Mean z-score -2.10
Structure conservation index 0.82
SVM decision value 0.40
SVM RNA-class probability 0.722087
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17096048 105 - 23771897
AUCAAACACUAAUUUUCUGUUAGUGCAACAGACCACACUCAAAGUGCUGGCCACUGCAGUUUGAAUCGCUUUUUAACAACGCUGCAAUUUCUGUGCCCAUUUUGA
.((((((((((((.....)))))))..(((((((((((.....))).)))....(((((((((((......)))))....))))))...)))))......))))) ( -25.60)
>DroSec_CAF1 54229 105 - 1
AUCCAACACUAAUUUUCUGUUAGUGCACCAGACCACACUCAAAGUGCUGGCCACUGCAGCUUGAAUCGCUUUUUAACAACGCUGCAAUUUCUGUGCCCAUUUUGA
......(((((((.....))))))).............((((((((..(((((.(((((((((((......)))))....)))))).....)).))))))))))) ( -25.00)
>DroSim_CAF1 57580 105 - 1
AUCCAACACUAAUUUUCUGUUAGUGCAACAGACCACACUCAAAGUGCUGGCCACUGCAGUUUGAAUCGCUUUUUAACAACGCUGCAAUUUCUGUGCCCAUUUUGA
......(((((((.....)))))))..(((((((((((.....))).)))....(((((((((((......)))))....))))))...)))))........... ( -23.90)
>DroEre_CAF1 54312 104 - 1
AUCAAACAGCAAUUUUCUGUCAGUGCA-CAGACCACACUCAAAGUGCUGGCCACUGCAGUUUGAAUCGCUUUUUAACAACGCUGCAAUUUCUGUGCCCAUUUUGA
.((((((((.......))))..(.(((-((((((((((.....))).)))....(((((((((((......)))))....))))))...))))))).)...)))) ( -26.20)
>DroYak_CAF1 57125 104 - 1
UACAAACACUAAUUUUCUGUUAGUGCA-CAAACCACACUCAAAGUGCUGGCCACUGCAGUUUGAAUCGCUUUUUAACAACGCUGCAAUUUCUGUGCCCAUUUUGA
..((((.((((((.....))))))(((-((..((((((.....))).)))....(((((((((((......)))))....)))))).....)))))....)))). ( -24.00)
>DroAna_CAF1 54860 80 - 1
-----------------------UGCAACC--ACACACACAAAGUGCUGGCCACUGCAGUUUGAAUCGCUUUUUAACAACGCUGCAAUUUCUGAACCCAUUUUGU
-----------------------.((((((--((((.......))).)))....(((((((((((......)))))....))))))...............)))) ( -13.20)
>consensus
AUCAAACACUAAUUUUCUGUUAGUGCAACAGACCACACUCAAAGUGCUGGCCACUGCAGUUUGAAUCGCUUUUUAACAACGCUGCAAUUUCUGUGCCCAUUUUGA
......(((((((.....))))))).............((((((((..(((((.(((((((((((......)))))....)))))).....)).))))))))))) (-18.81 = -19.60 +   0.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:06 2006